RNA id: TU210383


Basic Information

Item Value
RNA id TU210383
length 2712
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G185235
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3115093 ~ 3118468 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAAAATATTATGTATTCAAAACAATATATTCAATTAAATAAGTTTTTTCTAAGACAATAATAAAATATTATTTCAAACTACAATTTCATAAACAAAAATGTTATACTTTAGTGAGGCTTTTTTCTTCATTATGATATCAGAAAAGTTTTTTTTTTTTTTTGGGTTAAGTAAAAATCTATTGAACATTTAGTAAAAATCTATTAAACATTAAGTAATACATTATTATAACATTTATTAATACATTTAGTAATACATTATCATTACAAAAAATTTTATTTGTTAGAATTAGTTAATGCACTGTAAACTAAGAGAGAGAGAGGGGATTGTGTCGGTGTGTGAGGTGGGGGGATTTGTGTGTGGCTTGTGGACATTTTATATTGATGAATTGGTATCTTATCTTTTCACAGACATGTACACTATATTGCCAAAAGTATTGGGACACCCCTCAAAATCATTGAATTCAGGTGTTCCAATCACTTCCATGGCCACAGGTGTATAAAATCAAGCACCTAGGCATGCAGACTGCTTCTACAAACATTTGTGAAAGAATGGGTCGCTTTCAGGAGCTCAGTGAAGTCAAGCGTGGCACCGTGATAGGTTACCACCTGTGCAATAAGTCCATTCGTGAAATTTCCTCACTACTAAATATTCCACAGTCAGCTGTTAGTGGTATTATAACAAAGTGGAAGCAATTGGGAACAACAGCAACTCAGCCGTGAAGTGGTAAGCCAGGTAAAATCACAGAGCGGGGTCAGCGCATGCTGAGGCTCACAGTGCGCAGAAGTCGCCAACTTTCTGCAGAGTCAATATCTACAGACCTCTAAACTTCATGTGGCCTTCAGATTAGCTCAAGAACAGTGCGTACAGAGCTGCATGGAATGGGTTTCCATGGCCGAGCAGTTGCATCCAAGCCTTACATCACCAAGTGCAATGCAAAGCGTGGGATGGACTCTAGAGCAGTGGAGACGTGTTCTCTGGAGTGACGAATCGCGCTTCTCTGTCTGGCAATCTGATGGAAAAGTCTGGGTTTGGCGGTTGCCAGGAGAATGGTACTTGCCTGACTGCATTGTGCCAAGTGTAAAGTTTGGTGGAGGGAGGGTTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAGGAACTCTTAATGCTTCAGCATAGCAAGACATTTTGGACAATTTCATGCTCCCAACTTTGTGGGAACAGTTTGGGGATGGCCCCTTCCTGTTCCAACGTGACTGCGCACCAGTGCACAAAGCAAGGTCCATAAAGACATGGATGAGCGAGTTTGGTGTGGAGGAACTTGACTGGCCTGCACAGAGTCCTGACCTCAACCCGATAGAACACCTTTAGGATGAATTAGAGCGGAGACTGCGAGCCAGGCCTTCTCGTCCAACATCAGTGCCTGACCTCACAAATGTGTTTCTAGAAGAATGGTCCAAAATTCCCATAAACACACTCCTAAACCTTGTGGAAAGCCTTCCCAGAAGAGTTAAAGCTGTAATAGCTGCAAAGGGTGGGCCAACTCCATATTAAACCCTACGGATTAAGAATGGGATGTCATTAAAGTTCATGTGCATGTAAAGGCAGGCGTCCGAAAAACTTTTGGCAATGTAGTGTATGTAGCAGATGGTCACTGACGTTCCCAGAGTTAATGTTTACATTTGCTAGCCGAGCACGCAAGCAACTATAGCTACTCACCTGGTACGTTTAAAATCGATGTGATTTCTCCCCAGCTGTTCTCTTTATCGGTGCGGTTGTGGTATAGTTTTGAAGATACTTTGTATAGGCAGTCATGTTGTAGCCTTGCCACATATCAACAAGTCGCTCCTCCATCTCTGAAGTCCAGCGGATCCATGCTGCAGGTTTCACAGTCGCCATTTCAAAATATCCGTCACTTCCGTCTCCTTGTAGACTTGTTTCTTATTGGCTATTGTGACAGTACTGTCGTAATCATAGTCTTGATTATCCCGATTTAAAAAATCCTAAATATCAAACATGTTTGATATGATTGGGGCGGCCCCGATTTGTGTGAGAGTAGATCGGGAGGTGCAAGATTCGATCTGTGAACGCCTTACATTATCAGATAATGCACCAAACATCAGAACCAATCAAGCTCCTTGACAAGACTTTTTTCTCTGATTCTCAGAAGGGGAAAATCAGGGATAAATCAGCCTAAAACTCCTGTAGTGTGAGCACAGATTTACATGAACAAACAACCAACAGTTGTATTTGTATTAACTAAAGTTAAGAAAGATGAATAAATACTGTCACAAATGTATTGCTCATTGTTGATGTTAGTTAATACATTAAAGGTGCAATGTGTAAATTTAAGGAGGATCTATTGACAGATATGTAATATAATATACATAACTATGTTTTCAGTGGTGTATAAAGACCTTACATAATGAGCCATTAGGTTTTTATTACTTTAGAATGAGCCATTTCTATCTACATACACCATGGGTCCCCTTACATGTTAAGAGGCCATTTACACTACACCGTTTTTAACTAAACATGGAAAACTTTTTATGTGTTTTGGCTGTCCATTTACACGACAATGGCGTTTTGGTTGCCTGAAAACGCAAACTTTTGAAAACGGGTTTCAAAGTGCAAGTTTTTGAAAATGGTCTCTGTGTAAACAACAAAAATGCGCATCTGTGAAAATGATGACGCCATGCACATGCGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210291 lncRNA upstream 69285 3045440 ~ 3045808 (+) True G185171
TU210281 lncRNA upstream 76083 3038787 ~ 3039010 (+) True G185163
TU210272 lncRNA upstream 84218 3030662 ~ 3030875 (+) True G185154
TU210258 lncRNA upstream 98930 3015906 ~ 3016163 (+) True G185140
TU210253 lncRNA upstream 107752 3007139 ~ 3007341 (+) True G185135
TU210301 lncRNA downstream 6975 3125443 ~ 3149816 (+) False G185175
TU210305 lncRNA downstream 9343 3127811 ~ 3133688 (+) True G185178
TU210295 lncRNA downstream 16297 3134765 ~ 3135483 (+) True G185175
TU210442 lncRNA downstream 199333 3317801 ~ 3318156 (+) True G185287
TU210445 lncRNA downstream 204385 3322853 ~ 3323253 (+) True G185290
CI01000040_02975088_02975548.mRNA mRNA upstream 139147 2975088 ~ 2975946 (+) True CI01000040_02975088_02975548
CI01000040_02889343_02891410.mRNA mRNA upstream 223654 2889343 ~ 2891439 (+) True CI01000040_02889343_02891410
CI01000040_02650575_02692600.mRNA mRNA upstream 422422 2649543 ~ 2692671 (+) True CI01000040_02650575_02692600
CI01000040_02609749_02611069.mRNA mRNA upstream 503858 2609749 ~ 2611235 (+) True CI01000040_02609749_02611069
CI01000040_02602517_02603172.mRNA mRNA upstream 511470 2602357 ~ 2603623 (+) False CI01000040_02602517_02603172
CI01000040_03168337_03198400.mRNA mRNA downstream 49869 3168337 ~ 3198400 (+) True CI01000040_03168337_03198400
CI01000040_03212701_03215022.mRNA mRNA downstream 94233 3212701 ~ 3215168 (+) True CI01000040_03212701_03215022
CI01000040_03271519_03276006.mRNA mRNA downstream 152595 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
CI01000040_03297317_03298657.mRNA mRNA downstream 177987 3296455 ~ 3298896 (+) True CI01000040_03297317_03298657
CI01000040_03761247_03762668.mRNA mRNA downstream 642693 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
TU208940 other upstream 1878604 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 2136930 974113 ~ 974246 (+) True G184034
TU208290 other upstream 2838238 197712 ~ 276855 (+) True G183418
TU208294 other upstream 2950171 157543 ~ 164922 (+) True G183420
TU208230 other upstream 3054696 53691 ~ 60397 (+) True G183366
TU210451 other downstream 215110 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 620519 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 855297 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 2850577 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 2850577 5969045 ~ 5971732 (+) False G187510

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU14514 True 5866 TUCP 0.38 4 NC_047595.1 22578792 ~ 22639022 (+)