Gene
RNA
| Item | Value |
|---|---|
| gene id | G185175 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 3125443 ~ 3149816 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU210301 | False | 1431 | lncRNA | 0.50 | 12 | 3125443 | 3149816 |
| TU210295 | True | 662 | lncRNA | 0.37 | 2 | 3134765 | 3135483 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000040_02975088_02975548 | NA | coding | upstream | 149497 | 2975088 ~ 2975946 (+) |
| CI01000040_02889343_02891410 | KCTD16B, KCTD16 | coding | upstream | 234004 | 2889343 ~ 2891439 (+) |
| CI01000040_02650575_02692600 | NA | coding | upstream | 432772 | 2649543 ~ 2692671 (+) |
| CI01000040_02609749_02611069 | ARHGAP26 | coding | upstream | 514208 | 2609749 ~ 2611235 (+) |
| CI01000040_02602517_02603172 | NA | coding | upstream | 521820 | 2602357 ~ 2603623 (+) |
| CI01000040_03168337_03198400 | RBM27 | coding | downstream | 18521 | 3168337 ~ 3198400 (+) |
| CI01000040_03212701_03215022 | POU4F3 | coding | downstream | 62885 | 3212701 ~ 3215168 (+) |
| CI01000040_03271519_03276006 | NA | coding | downstream | 121247 | 3271063 ~ 3276040 (+) |
| CI01000040_03297317_03298657 | DRD1B, DRD1 | coding | downstream | 146639 | 3296455 ~ 3298896 (+) |
| CI01000040_03761247_03762668 | BOD1, FA44B | coding | downstream | 611345 | 3761161 ~ 3762674 (+) |
| G185235 | NA | non-coding | upstream | 6975 | 3115093 ~ 3118468 (+) |
| G185171 | NA | non-coding | upstream | 79635 | 3045440 ~ 3045808 (+) |
| G185163 | NA | non-coding | upstream | 86433 | 3038787 ~ 3039010 (+) |
| G185154 | NA | non-coding | upstream | 94568 | 3030662 ~ 3030875 (+) |
| G185140 | NA | non-coding | upstream | 109280 | 3015906 ~ 3016163 (+) |
| G185287 | NA | non-coding | downstream | 167985 | 3317801 ~ 3318156 (+) |
| G185290 | NA | non-coding | downstream | 173037 | 3322853 ~ 3323253 (+) |
| G185292 | NA | non-coding | downstream | 174150 | 3323966 ~ 3324197 (+) |
| G185255 | NA | non-coding | downstream | 195444 | 3345260 ~ 3345502 (+) |
| G185707 | NA | non-coding | downstream | 227989 | 3377805 ~ 3378351 (+) |
| G184003 | NA | other | upstream | 1888954 | 1230292 ~ 1236489 (+) |
| CI01000040_00977184_00977458 | NDUA2, NDUFA2 | other | upstream | 2147280 | 977184 ~ 978163 (+) |
| CI01000040_00240852_00305487 | GABRB2 | other | upstream | 2848588 | 240849 ~ 313275 (+) |
| G183420 | NA | other | upstream | 2960521 | 157543 ~ 164922 (+) |
| G183366 | NA | other | upstream | 3065046 | 53691 ~ 60397 (+) |
| G185296 | NA | other | downstream | 183762 | 3333578 ~ 3333983 (+) |
| G185884 | NA | other | downstream | 589171 | 3738987 ~ 3739281 (+) |
| G185947 | NA | other | downstream | 823949 | 3973765 ~ 3974123 (+) |
| G187510 | NA | other | downstream | 2819229 | 5969045 ~ 5971732 (+) |
| G188149 | NA | other | downstream | 3658875 | 6808691 ~ 6809130 (+) |
