G214317


Basic Information

Item Value
gene id G214317
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3317809 ~ 3319129 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243165
ACATGTATAAAAAAATTAATTTTATTAACAAAAAAGATAAACAAGAGAACCTAACACAACTACTAACATGCTGACAGAAACAAAGTGACTCCCCAAACAGAAAAACACACACATTTACTCTCTGCAGAATGCATGTAAAAATAACATGGTTAAATGAGCTACATGTTTCTCTTCATTTTAATTAGTTAAACTCATCTAGGCAAATAATTCCGCACCATTAATCACTTCACTTCTTGACAACATAACCATAAGACAGACTTAAGGCCTGTTCACACCATGAACGACAACTAAAGATAACTATAACGATAACTAAATTAGCGTCCACACCAGCGAAGGATAACATTCTATTTATTCTAAGCACATGCTGCAGTTACAAGTATAGGTCATCTGCCACTTTAAATGCTCAAGTTCTTTCAAGTCTGGTGGATTCTGATTGGCTTTCATACTTTTAATCCATCAGCAGGAAAAAAAAATGTTCTGAAAGTGACTGCAACGATATAGTTTCTCTGTGCCATTATTGTTACAGTTGTGGTGTGGACTCTGCTATTCTTTTATATTTACCGTTATAGTTATCATCCTTGGTGTGAACGAGCCTTTACTGTAGTACAGACTTGTTCCTTGGATTTGAACATATAACTTTAAAATCACAAAATAGGGGGGAAAAAAATAATAATAAAAGAAACTTACGAATTTCCATCTTTCTCAAAAGAGCATTTACTACATGCTTACATAAAACATTCCACTCTCCATCAAAAGAATTTCCATCACATCCTACATTAATGATTTGTAAATAATAATAAAAAAAGAAGCATTTTTGTATTGTAAACATGTCATGGTTTAAGGAAAGAGAGAACGAGAACTCAGAGCAGAGAAAATGGTGGGCTTTAATCGACTCAATATACAAACAAACTAACAAAAACTACCATAAGGGGGAAAAACACACAGTCCAGGGCAGGTGGCAGTGCAGAAGACAGGTATAGGACCGCCCAGGCTGAACTGGAGCATGATGCCGGCACTTCTAAAAAGACAAGAACAAAACCAGAAAAAAACATGAGTGGCAGGATCCTGTACAAATGACCAATGGAAGTGTTTTAATTTTATTTAAACAATTTTACAGAGGTTGAAGAATAGTGTTGTTTATGAAAAAAGGTTTGCATCCATTTTTACAAAATATACATATATACACTTTATTTTGATGGTCCACTTTAGACATTCTGCTGATTATAAGGAACGTTGCACCTACATGTCAACTTATTCTACTAACCCTAACCCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243165 True 1275 lncRNA 0.34 2 3317809 3319129

Neighbor

gene id symbol gene type direction distance location
CI01000050_03142876_03156191 KLHL22 coding downstream 159245 3142811 ~ 3158564 (-)
CI01000050_02945824_02971282 GNA14, GNA14A coding downstream 346440 2944921 ~ 2971369 (-)
CI01000050_02785728_02797909 PHYHIP coding downstream 519900 2785556 ~ 2797909 (-)
CI01000050_02752537_02755836 COX5B.1, COX5B1, COX5B coding downstream 561973 2752032 ~ 2755922 (-)
CI01000050_02528520_02596972 TCF7L1B, TCF7L1, TCF7L1A coding downstream 720837 2528520 ~ 2596972 (-)
CI01000050_03362364_03363241 NA coding upstream 43155 3362284 ~ 3364257 (-)
CI01000050_03491159_03514757 NA coding upstream 171959 3491088 ~ 3514757 (-)
CI01000050_03635030_03637939 NA coding upstream 315444 3634573 ~ 3639160 (-)
CI01000050_03672005_03672822 NKX3-1 coding upstream 352777 3671906 ~ 3672888 (-)
CI01000050_03721951_03724091 NKX2.7 coding upstream 402668 3721797 ~ 3724452 (-)
G214334 NA non-coding downstream 26013 3290058 ~ 3291796 (-)
G214335 NA non-coding downstream 30159 3287303 ~ 3287650 (-)
G214282 NA non-coding downstream 73509 3237894 ~ 3244300 (-)
G214288 NA non-coding downstream 126752 3190855 ~ 3191057 (-)
G214279 NA non-coding downstream 143943 3173448 ~ 3173866 (-)
G214408 NA non-coding upstream 132219 3451348 ~ 3451945 (-)
G214413 NA non-coding upstream 145140 3464269 ~ 3469715 (-)
G214433 NA non-coding upstream 250687 3569816 ~ 3570646 (-)
G214434 NA non-coding upstream 258741 3577870 ~ 3580653 (-)
G214448 NA non-coding upstream 270898 3590027 ~ 3590254 (-)
G214027 NA other downstream 744907 2557166 ~ 2572902 (-)
G214017 NA other downstream 853111 2462176 ~ 2464698 (-)
G213948 NA other downstream 986493 2328513 ~ 2331316 (-)
CI01000050_02230904_02233429 NA other downstream 1076920 2228865 ~ 2233429 (-)
G213704 NA other downstream 2000703 1312983 ~ 1317106 (-)
G214314 NA other upstream 94319 3413448 ~ 3424257 (-)
G214436 NA other upstream 206687 3525816 ~ 3589057 (-)
CI01000050_04564233_04580815 KANSL3 other upstream 1244558 4563687 ~ 4581278 (-)
G215935 NA other upstream 1729787 5048916 ~ 5073109 (-)

Expression


Co-expression Network