G214413


Basic Information

Item Value
gene id G214413
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3464269 ~ 3469715 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243276
TCCACGACACTCATTTATTGCAATACATGCTGATGACAGCAGACGTTTTATAATTAGTAATTCGGTATATTGTTCCCAAGTACAATAATTCAGAGAATAATAATCTGCATAGAAAGGCAAAGCCTTAACAGTCAAGCTCAACTGAGTAATGAAAACGTACTTATTTTTCTTGGTAACACATCATTTTCTAAAAGTAGCTACAGACATTTTCTTATTATGATGATACATGGATCAGGGAGTAACATCTGTCTAAAAATATAATTTTATATGAAACTGCTGAACAATGTACATCCTATTAGAGTAACATACAATGTTTATTGAGTTGATGGCTTACACTTACAGTAACTAATGTGCGAGTGTATTTAGCAAAGACAGAATCAATTCATGTGTGAAAGCAGATGTAGAAAAAGTGTGGAAATGTTGCAGTTCTTGAGATTTAAAGTGCCCCTAATATGGATTTTTGAAAATTACCTTTCATGCAGTGTGTAATGTATGTGAATGTAAACAGTCTGCAAAGTTGTGCATCATAAATAAAGTTGTCTCTCAAAAGAGTTAAACCGCTTAAATAAGTTGTTTGTAATTCGAAATCTATTTTCGTGAAGTTCACATATCACACATTTGCATAATGCCAGCCTATGTTCTGCGTGGACATCCCCTTCTCAAACGCTGTAGCTCGTTCGTGTGGGTAACATGTCTACAAGACGTTGTGCTCTGCACTGTGAAAGTAAATTCGCTTTATTTTCACTTTCAAAGGATGAGGCTGTAAGAATCAATGGTTAAAGATAGGACAGTGCCCACTTTATTTGGACCAACTTGCTCCTCAGAATCACAACCTATAAGTATGATTAATTATTGACGTATATATTTTATACCGAGTGTTCAAAATACATTGTGTTTGTGTTTTAGCATTGTGTATGTCTCCAGCTAACTCACGTTATTGTCCTACTGAAATACTTCTGCTAATCAGCTGTTGCTCACTATTACCTAAAACTGTGTCCATTAATGCAGATTGTCTGTAGTTCTTACTACTCTGAGTAATGATAATGGAGCAAGATTTGTTTTACAAACTTTAATATTACATCACGTTAGTGCTCAGCTAACATATGCACTGTAATTTATATTGTTAATAATACAGTTCCCACATGTGTACTAGGGGTTGAACGAGATTTTTTAAAGTCGACATATATGTGATCGACTAGTTGATGATGGCGTCATTAATGAACAAATATGGGGCCGTCCACACAGAACACGTTTTTCCATTAAAATGCGCTACTTTTCCATTGTTTTTCTATGTAAGTACCAAGCGGTAACCTCCCGCGGTCTCTCTTGAAGCCAACACGGAAGTAACTTAAACTGCAATTCATCGACTGGCCGCTAGAGACAGGCTCCAGAAGGGAGGCAAATCTGTATCCCCCCCATGTTTAAATGCCCAAATTTATAGCAGAAAAAAATGTTTACAGCCCAATGCAAAAAGTGGTTTTGGTCTATACATCTAATTTTACCCTTCATGACAACTGTGAGGGTGGTGAATTTTTTTTTATAACTCATCTGTTTAAATTATATAAATTATATTAAGTTCTGCATAATTAAGGGCGTGGCCACTTGAGTGACAGGTGGGTTGCCGCTGCTGTCACTAGCTGTTTGTCTGCTGACTGTGAGCTATCACGTCACCTCAGCTAATTCTAGCTGCTGAACTTGGCATCTTTGCCATGTTTGCTTTTTTTGGGGGATTATTTCATACAATTATCAAATATGGCTTGCTGTGCAGATAATGGTCGAGACAGATGTGCGTCTGTGTACATGTGCATGCATGTCATGCGGAAGATAAACACAACACACGTTGTTGGATCGTCTTGGCATTGGCTTAAAGTTTTGTCCACCAGATTTACTACAATGACAATGGCTGGAGAATATGCCACTCAAGACACCACAAACTCCAAGAGCACTGCTTGGATATTATAACCAAATCTGCTGCACTATTTTGAAAAATTATACTTTGGACGCGGGCTCATTTGTTTTTGAGAGTTCAATGTATACAATCGTATACAGTTTTACAACATAAACGGTGCTCAGATTGCAATGGACAATATATCGATATATTTTATGGATTTAACACTTTTGTGAACAAAAGTTGGCTGTTGGACGTTTTTCAATGGACGCTCACGGGCATTTTACCCAAGTGCGATGGACTGGATTCATCTCCCGATGGCTATTTCATTACAAAGGTATGAAGTCCCGTTTTGATTTTGCATGTTGTCATTTGCACACCCGACACAAATTACAATATTACTGTTGCTGGAGCATCTATATGGTAAAATTAATTGGCAATTAAGTTTGGCATCGGGCCAAAAAAAAATTTCGCCACTAGATGGCGGGCCAGAACATAGTCAAAGGATAATTTAAGAAATTAGGCTAATTGATGAAAAATGCAACTAGAATTGCCTGTGACAGACTGTTACAGTGTCTTTTGTAACTGTTACTCTGTGTTAAATCCTGTAGTGGGACAGTCATTAACAAAAAGCCACATTTGTGTGGTGGTGTCCAGGTTTTACACTGGATAAATTAATAAAGCAGAGTAGTGACACATAACCTGGCAAGTATCTTCATTCACCAACTTGCAACACACATAGCCTTGCTAAAACACACATAACACACACGGATGGCCGGCTCCGCCCACTTTAGGCTTCAAAAATGCTCTCCAGGGGCCTCATTTATGAAGCGTGCGTACGCACAGATTTGATCTTAGAATGTGCGTATGTTTAAATCCACGCCAACGCTCATATTTATAAAAACGGTCTTTGACGTGGAAAAGTGCTTGGTGTCACGTCAGGGTCTGAGCAGATGTACACACTTTTCCTGGTCAGATTACTGCAAGTTTTTGGAAATCTAAGCTATTCTTGCTGCTCGCCAACGATTTGGACAATAACAGTTGATCTTTTATACGTAAATGACATTAATTAGGTGTCGTTTAAAACGCGGAGAACTGAAAGCATTCAGCTCCGCGCAAGTTCAAGATTATTTGCGATTTATAGATTTCACATCTGAAAGAGAGGCGTACGCTCGTTTTCTGTGTGTACGTTCATTCTATGAATCCCACATACGCACATCTGAGAAATGATCGTAAGATCAAATTTAGGACGGTTTCTGTGCAACATTTTATAAATGAGGCCCTTGAAATCTACGGGTGACGTCACGGACACTACGTCCATTTTTTTTACAGTCTATGGTAAATACATGCTAGATGGACGTGTATATGACTGTTGTGCTCATGTCTTGCTCTTTTGCAGAGTCTCGAGCATGACACGGCGTTATATAAACGCAGCGCTCAAGTTCAAAACAGTTCAACTTTAAAAAAACGTGTCTCGAAACCACTTTTTTCCTCTATTCCACTGCCCGTGTTTCGTGTTTTTGAAAGCAAAAATGCATTCTGTGTGAACGAGGCCTAAGTCTGAACCTCGAGCTGAGACTCGCAGATTGCCTTCTGCACAGCTATGGCACATGACACAACGCTGCCCACAAGTCTATTGCTCTTACATAAGTTTATTTTTATCAGTTCTTTTGACTTTGGGTCGTTATATTTCTCACAGATCTGCTCGTTCTAAATCAGATACAGATAAAGCAGCACAGTAAGATTACATTTATATGATTGCGTGTGAATTAATTCTACCTGGCAGCGTCTCTAATAGTGAAGCTGTGGGTTTTAGTTACTAAGAAATATATGCTAGATATTTCTTACATTTCTGCACTACTGAATGATTCTGTATGCGCGCAATCTATTTGCACATGATGTGTGTGTGTAGCAGCGCAGTTCAGAACGTCGATTAAATATACACATCAGTTTGTTGATTGACATACACTTGTTAATGCTGATGCAGAGGAATTACAGTTGCAACATCTCATAATATATGTCATACTGAGTAGTGTATCACTGAGAAAACTCCTACTCGTTCTTGTGATGGAGGTTTAGGTTGAATAACTAGTTCTTCCAATGTTTCATCATCGGACTCGCGCTCGGATTGATATAATAAAATCAACACCGTCATTACTGTCTTTACAGTGTGTACAATCGCTGAATTTTAGGAAGCCTCCGGAGCTGAATCAGTTCTGGTAATGGGCATTTGGAAGCATTTAGAGACACTGATTCATCCGACGAGTTGTTTGAGAATCATTGAAAAATGTGGTGATGTGTATTATGAGAAAATGAGAGTGTATTTTAATCTTTGATGCATGTAAACCTGTTGCAGGAGACCTCCAAAACATAATTAGGAACCTTTCAAATTGCATAATAGGGGCACTTTAAGCACTTGCAGCCTGAATCCCCAGAAAAACGTCTCCAGCAGCCTATTTGGCACTGAGGTCCACCACGAGATGCTGGTACGCCATGGTCTTTCCTTTAAAACTGGCCGCTAACAGAATATCCTTATTGTCAACAGAGACCAGGCTGAACCCTCGAGGCGCAAGCATGTTCAGTTCCTGAAAGGGCTGGAACCTTTGAGTGAGGTCGTCCCACAGATAAATACGAGAGAACGAATAATCGCTCCCCAGCAGAAGGTACTGCCTCACTCCAACGCTGAACGGATACACGGCCATTGAGCCACGTGACGGCAGCGTTTGAATCTCCACAAAGCGCTGGTTGTCCCAGCGCAGGATCTTCGAGTCTCCTATGAAGCGCGTGAGGCAGAGATACAGCACTTTTCGTATCCAGAAGTGCTTCACCATCTGCACATCACCTGAATCAGTGATCTGCGAGTGGTAGACGAATTGGCGTTGGCTGCGGTTCCACTGATACACCACCGGGGGCTGCGAGGTGCTAGAGAGAATTAGACGAGGTTTGCCGTCCACCTCGAGGAAGTCGATGTGAGTGTCTCTGTGCCAGGGATGGAGAGACTGGTGCGAGTAAAAGCCGTTACTGTTCCAGCGGTACAGGCTGGTGGATCCAGCTTTGGAGCTGTCGACTACAGCAAAATACCAGTCCCCTTCAATCTGGAAAGTCTCTATGAAGTTGGGTTTACGGACACGAGTGGTGTCGATGTCCTGGATTTTGACGAAACGCAATGGTCCTTCCTCCCATCTGACAACAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243276 True 5082 lncRNA 0.41 3 3464269 3469715

Neighbor

gene id symbol gene type direction distance location
CI01000050_03362364_03363241 NA coding downstream 100012 3362284 ~ 3364257 (-)
CI01000050_03142876_03156191 KLHL22 coding downstream 305705 3142811 ~ 3158564 (-)
CI01000050_02945824_02971282 GNA14, GNA14A coding downstream 492900 2944921 ~ 2971369 (-)
CI01000050_02785728_02797909 PHYHIP coding downstream 666360 2785556 ~ 2797909 (-)
CI01000050_02752537_02755836 COX5B.1, COX5B1, COX5B coding downstream 708433 2752032 ~ 2755922 (-)
CI01000050_03491159_03514757 NA coding upstream 21373 3491088 ~ 3514757 (-)
CI01000050_03635030_03637939 NA coding upstream 164858 3634573 ~ 3639160 (-)
CI01000050_03672005_03672822 NKX3-1 coding upstream 202191 3671906 ~ 3672888 (-)
CI01000050_03721951_03724091 NKX2.7 coding upstream 252082 3721797 ~ 3724452 (-)
CI01000050_03759473_03767344 STC1 coding upstream 289710 3759425 ~ 3767563 (-)
G214408 NA non-coding downstream 12324 3451348 ~ 3451945 (-)
G214317 NA non-coding downstream 145140 3317809 ~ 3319129 (-)
G214334 NA non-coding downstream 172473 3290058 ~ 3291796 (-)
G214335 NA non-coding downstream 176619 3287303 ~ 3287650 (-)
G214282 NA non-coding downstream 219969 3237894 ~ 3244300 (-)
G214433 NA non-coding upstream 100101 3569816 ~ 3570646 (-)
G214434 NA non-coding upstream 108155 3577870 ~ 3580653 (-)
G214448 NA non-coding upstream 120312 3590027 ~ 3590254 (-)
G214432 NA non-coding upstream 129509 3599224 ~ 3612080 (-)
G214435 NA non-coding upstream 133850 3603565 ~ 3609225 (-)
G214314 NA other downstream 40012 3413448 ~ 3424257 (-)
G214027 NA other downstream 891367 2557166 ~ 2572902 (-)
G214017 NA other downstream 999571 2462176 ~ 2464698 (-)
G213948 NA other downstream 1132953 2328513 ~ 2331316 (-)
CI01000050_02230904_02233429 NA other downstream 1223380 2228865 ~ 2233429 (-)
G214436 NA other upstream 56101 3525816 ~ 3589057 (-)
CI01000050_04564233_04580815 KANSL3 other upstream 1093972 4563687 ~ 4581278 (-)
G215935 NA other upstream 1579201 5048916 ~ 5073109 (-)
G216093 NA other upstream 2019842 5489557 ~ 5552103 (-)

Expression


Co-expression Network