G214435


Basic Information

Item Value
gene id G214435
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3603565 ~ 3609225 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU243303
GGCGAGGCAACAAATAGTTAAAGTGCTCACTGGTGCTTAACAGGAGCTGCATCCGAAAACTTAGGCAGCCGACTTGTTGCCTCTCTGCCTTATCAAGCAACGACTCTGCAGGCAGCGTTTGCACATGAAGCTCGACTGTCACAGAATGGAAAGCACAAGTTTGTGCAATTCAAAAATTGATCAGATGAAGGCATCTCAGGAGACAGGAAGTGAAGCTAACATTGGACTCGGACGTGCCTTGATGCCTTCCTACTTTGGAATGCTTCCTCCAAAGGCAGCATTTTCCAGTTTTTGGACACACTGAAATGAGTCATACCACCGACTTTACCAGAGAAGCTGAAGTGAATACACAAGAAAACCCTCTCATTCAGGCACGCGTTTATTGCATGGATGGAAAAATAACGGTGGGCGAGAGCCGCGAAGGGAACGCCGCAAGGCCGGAAGCGCGAGTGTTAACGAGTGTCAGCTGCGCGTTGCACCGGTCTCGACTCTCTCACAGAGGAGCTCCAGAAGCATAAAAGGGGAGCGACGACAGTGAAGGACGAGAGAGGACCAGGCCTGGATTTTATGTTGTGTTTTATAATGTTTGTGTGGCATTACTTTCCTTTTGTTCTTTGTTTATTTTATATTTTAAAGTTTGTTTGAACGTTCGCCGGTTCCCGCCTCCTCCTTCCCGTATCTACGAACTGTGTTACAGTGGTATAGTATTGCAAGACATTTTTATGGTATCGTGACAACCCTAGCACCATTCTCATTTTCAAGAGCATGAATGACCAGATAGACACAGGGAGTGTGTGTGTGAGTAAAGGTCATGTATGGAAAAGCAAGACTGTGTCAGCCAAGTGTCCTGAAATGCTCCTCAGAGGTGCTTCAAGGAAGTGACAAACCTTGTTACAGCTGGCAAGTCCCTCAGAATTTCTTATACACTGGAAATTCCTGTTTTACTGAACAGCCTGAATCATTACAACACTACAGCCTGATTTACTATAAACACATGTGCTCTGGTAACTGAATTGCAACATCATGTATGGGTAGATGTTTCAACATTACATTTGATTTTGTGCTAATAAAATAAAAGCTAATAAGCTAATAAAAATAAGCAGTCACTAATCAACATTTCCATCGCTAACACAAATCTCAGTTTCCCTTGTCCCTTAAGACACTTTTTTTTTTTTCAGCAGACAAAAGCTTAGAGGAAGTATTTTAAGCTAATCTCTTTCTGGATGTTTGACAAATGATTTACAGGCCTGTCGCACGAATCATTAAAAGCTTTACACCTTATCTTCTGTTAGAGTGTTAGAGGGATGATATTATCTACTTTTATAAGTCTGATCTCAAATTTAATTTAATTCATCTTTACAAAAAAATAAGACATTGAATGTGTTTTGCAACATTTAACTTGTGCTGTATTCTTGAGCAAAATTAAACATTAAACAGTAGATAATGTAAAGCTGGATTTGACTGACTCAAACAGTCTATGATATGATTAACATGATATGACACATTAAAGTGTATACGGTAATGTAAAGGAAGACTAAAGTAAGGAAGGAAAGATTTATTTTAAAACATGCCAATTTCCTTGAAATGCACTCTTTGTATTCAACTTGGTTTTGAAAAACTTTTGTGCCATTTTAAAGGAACGTTTCAATTTAATTACTCTAAAGATGTCATGCGGTATAACCATCAAGTTAAAGGCATTAACATATTTGCACCTCGAATTAGGGCCATTGATGAATCGAAATCATAATAAAATCATGATGTGAACATGCGTGATTTCTAAACCGATTTCTAAATATTGCTGTATTCTCAATAGTTTCCTATTGTATAAGTGATGTACAGTATGTTACTGTAGATTTTCAATGCATTCTGGGGAAATATTAGCCTACTGTAAATTTAAATACAGTACTAAATGACCACGAAAAATGACACCAAAAAAATAATCAACATCCAGGGCTTGGGAATATTTTGGATACAGGAGGGACGATGTATCATAGAGCCGGGTAAAAACTATCATTGTGGCAAAACAGAGTAGGGACCATTCACACAGAAAACGTGTTTTTGCGGTTAAAAACACATCTAGGGATGCCTTTTTAAAAGTTGAACTTCTTTTATCTTGAGCATGCCGTGTCAAATGCGAGATGCTGCCAAAGGTTAAAGACGTCTATCTAGCGCATTTACATGAAATTTACTAGAGGTTCTAATAAAATGTTAACTGCAGCAGTCTATTTTGAAATGTTTAATTAATCT

Function

NR:

description
PREDICTED: nephronectin isoform X4

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU243303 True 2247 lncRNA 0.38 4 3603565 3609225

Neighbor

gene id symbol gene type direction distance location
CI01000050_03491159_03514757 NA coding downstream 88808 3491088 ~ 3514757 (-)
CI01000050_03362364_03363241 NA coding downstream 239308 3362284 ~ 3364257 (-)
CI01000050_03142876_03156191 KLHL22 coding downstream 445001 3142811 ~ 3158564 (-)
CI01000050_02945824_02971282 GNA14, GNA14A coding downstream 632196 2944921 ~ 2971369 (-)
CI01000050_02785728_02797909 PHYHIP coding downstream 805656 2785556 ~ 2797909 (-)
CI01000050_03635030_03637939 NA coding upstream 25348 3634573 ~ 3639160 (-)
CI01000050_03672005_03672822 NKX3-1 coding upstream 62681 3671906 ~ 3672888 (-)
CI01000050_03721951_03724091 NKX2.7 coding upstream 112572 3721797 ~ 3724452 (-)
CI01000050_03759473_03767344 STC1 coding upstream 150200 3759425 ~ 3767563 (-)
CI01000050_03776675_03777031 NA coding upstream 167359 3776584 ~ 3777215 (-)
G214448 NA non-coding downstream 13311 3590027 ~ 3590254 (-)
G214434 NA non-coding downstream 22912 3577870 ~ 3580653 (-)
G214433 NA non-coding downstream 32919 3569816 ~ 3570646 (-)
G214413 NA non-coding downstream 133850 3464269 ~ 3469715 (-)
G214408 NA non-coding downstream 151620 3451348 ~ 3451945 (-)
G214473 NA non-coding upstream 45695 3654920 ~ 3655168 (-)
G214487 NA non-coding upstream 100876 3710101 ~ 3710420 (-)
G214521 NA non-coding upstream 108445 3717670 ~ 3717965 (-)
G214524 NA non-coding upstream 119372 3728597 ~ 3728812 (-)
G214529 NA non-coding upstream 142092 3751317 ~ 3751524 (-)
G214436 NA other downstream 14508 3525816 ~ 3589057 (-)
G214314 NA other downstream 179308 3413448 ~ 3424257 (-)
G214027 NA other downstream 1030663 2557166 ~ 2572902 (-)
G214017 NA other downstream 1138867 2462176 ~ 2464698 (-)
CI01000050_04564233_04580815 KANSL3 other upstream 954462 4563687 ~ 4581278 (-)
G215935 NA other upstream 1439691 5048916 ~ 5073109 (-)
G216093 NA other upstream 1880332 5489557 ~ 5552103 (-)
G216408 NA other upstream 2746792 6356017 ~ 6356511 (-)
G216931 NA other upstream 3554870 7164095 ~ 7165401 (-)

Expression


Co-expression Network