RNA id: XM_043259403.1


Basic Information

Item Value
RNA id XM_043259403.1
length 5316
RNA type mRNA
GC content 0.41
exon number 9
gene id tbcela
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12270559 ~ 12280161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATGTccataataatagaaaaaagttAGGTTCATGTATGAgctatttcagtttatttaccattataatatttcttaatatttttcatttagctttaaattagtttttgatTAAGGTATGTACTTTTTACAtcgtattattttaaaattatattttgcttttatctCACTTTCAGATTGAGCACTTCGCtagttattgtattttatttatttttaccgtGTAAAAAAAATAGGGTTAAAAGATGTTTTAGTCAACATTAACAGGACCGATCCGTCCGCTACAGCCTTTACGTTGCTAAAAGCAATTTCCCTGTGAAAAGCTTTATCACCGCTGGAGGGAGGCATTAGGCTTATCTCTGAAAATGCCCTTTTGAACGCCTGTCGTCCTCCTCTCCGGGAGCGCGCGCAGCCGAACGGGCCAATCAGGAGCGCCCAGCTGGAGTGACGCCACTTCCGTGACAATAGGGTCAGCGTGACTGATTTATCAACAATAACAAGAGCTTCGCGGAACAGTTTGGCGATCAAAGTGCGAGACTTCAAATGACACGATGCGCGTAAACTGACGGTTAGGAGTCGGTTCGGATTACAGCGTCCTGTCCCGCGTCTCACTGAGGAGCTGCTCATTCAGTAGCACTGTTATCTCGGAGAAGTGAGACGCTGAGCAGAGCCCGGTCTCTTTGCTGATTTGCGGCCACATTTTTTCGTTTGAGCCCTGACACTCGAAAGGACAGATAACGTTTGTCGTAAAAGTAAAACCTTATTTTATGGCACAGTTGTGACTTTGCACCTGTGAGGACAAATTGCACAGCAGTTGCATAAGGTGCACGGTGTTGGCCGGTGCAATGGAAGCTTCTGAGACAGAAGGCCGCACCTTTATGCAGGCGATCAGTGAGAAGTACAGCCCAGAAAACTTCCCTTGCCGTCGGGGTCCAGGTATGGGTGTCGTGGTTGTGCCATCTGGACATCAGGGATCGCCTATGAAAGACCGTCTGAACCTGCCCAGTGTTCTGGTTTTGAACGGCTGTGGAATCAGTCATGCAGGAGAAGAGGGAGAAATCGCTGCCTTCTGTGCTCATGTAGTTGAACTTGATCTGTCCCATAACAAGCTCCAAGACTGGCATGAGATTAGTAAGATTGTTTCTAACATCCCGAACCTGGAGTTCCTCAACCTCAGCTCTAATCAGCTGAGTGACGCAGCCCTGGAGCCGGACTGTGCGAAGGCCTTTTCTAGCATCCGCCGCCTCGTTCTTAACAATACCCAGGTGTCCTGGGATGCAgtgcacacattcacacaagaGATGCCTGAACTAGAGGAGCTGTTCCTGTGCCTTAATGAGTACACCACTGTGACACCGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTTCACATCACAGATAACAGCCTCCATGAGTGGAGTGAAGTACGAAAATTCGGCTCCATGTTCCCTGCGCTGGACACTCTGGTCATGGCCAACAACAACCTGAGCTCCATTCAAGACTCGGGCGAAATCCTTCAGCGGCTCTTCCCTAACCTCCGAAGCATCAATCTGCACAACTCAGGACTTAATCGATGGGAGGACATTGAGAAGCTAAACTTTCTGCCCAAACTGGAAGAAGTGAGGTTGCAAGGCATTCCTCTACTGCAGGCTTACACAAGCACAGAGCGCCGTAGTCTAATGATAGCCCAACTGCCATCAGTGACCGGTCTGAATGGGAGTGTGGTGACGGATGGCGAGAGAGAAGATGCTGAGAGATTTTTCATCCGTTATCACTTGGATCATTCAGAGGAAGAGCTGCCCCACAGTATTTGCATTTCGCTTTGGAGATATCACTGCTTGGTGACCAAATATGGGAAACTGGCTCCTCTGGCTGAGATCGACCTGAGACCGCGTTGCCACGCCAAAGTGGAGGTACGCTATGAAGACAAAGTGGAGCAGGTGAGCATCCGCTTGGACCAGACCGTCGCAGAGCTGAAGAAGCAGCTGAGGACTGTTGTGCAGCTCCCCACCAGCAACATGCGCCTTTACTACATCGACAAGGGTTCTGCCTTTGGCCCCGATGAGCTGAAATACAGCGCCAGGGCCTTGCACTCTTACAGCATTCAAGATGGGGATGAGATCCTGGTAGTTCCCAAAACAAAATAACCATCTTTCCACCAGGATCACTaaaaagctatatttaaataaccaaATCCACTTTGAACTAGCTCCACAGAGTGAATGGGACTGTCTTTCAGGGAAAAACTTCTAGGATTTGCTGGGGCTTTAGTTCGGCACATGATGTGCCACTTCGCTACACGGTCATAAGAAACACCATGACTCGTGCGCACCTTTGGTTTTGTTGCCGTTATTAAAGGTTTCCTTTTGTCCTCAGACTTCACGAGCACCCCTGTATTTTCAAACGCCtgtttcttcaaaaataaagcacagaGGAAGGCTCTGGCAGCCCGGGATGTGCTTTTTTCAGATTTGAAGACAATCACCCATAGCTGAAAGAAAATGTTGCACTGCACTGATGTCTTAAAGAAGAAATCTTGGATATCCATTGCCTGCTGATGTGTGTCGTATGCTGTCAGCAAAAGACTCTCAGGCCTTATATATTGTATGGGCAGTGCTAGATTCACACAAGGAAAGATTTGCAAAACATcttatttacaaatgtttttaaatgtccagtttagttttttaatcTGATTAAAGAATCCAGAAGGGACGTGCGGTGTCACATAAATTCgctatttaatgtgtttttttgttgttgatgttgtttttttaaatccttttttgaatatttttattagtgctttcTCCGCCACTTTGGAAGGGGGTGCTCAAACTTGTACCTCCAATACAAAGCATATGCTGAGAAAAGTGCTCATCTTCATTTCACCTGTATCCATGTTATTGAatgagtttatattttacatgcagAATAATAAGATCTTTTAAGTGACAAAACATCAGTCCACCAAAGAAGTATTACATATGATGATTAttcacagtatttattattgatttactGATTGgtgttatttgttaaaaattaaacaaaacaaatcagtaGCAAACCAGTCAATGTGTACGACTCTACGTTCAGCGGAACATCAGTGGGAAATTGGTCTTCTTAAGTTAAAGAATACCCAAAAAGgagaatttgattaaaatgtactcaccctcaggccatccgagatatAGATGAGcttcttcattggaacagatttagCATTACATAAATCACAgacggatcctctgcagtgaatgggtgccgtcagaatgagagtctgaacagctgataaaaacattgcaataatccaGATGACTTCAGTCCATTAATgaatgaaaagctgcatgtttctAAGAAACAAATTTAAGGCAAAATTACTTTCTCCAGTGGAAAAAGCCCTCTCTTTTGTATGCGCATATGCAGAGATATGCGCATATTTCTTTCCTGATTCAGGTAAAATGAGTTATCCTTGGATTTaaatgtgagaggacaacaggggaTGGATGACTTGAGCTATGTGGATTATGTCAATTtgcgtgatgtttttatcaacgctcattctgacggcacccattcactgcagaggatccatcggtgagcaagtgatataatgtTACGTTTCTCCAAAACCGTTAGTTTATAATTTACTTACGTTGaaccaaacctgtatgactttttatttttttctagggggcataaaaaaaatgctttttcagagtattttttttccatgccaaaaatggaagtcagtggtaaCAAAAACTGTTCTTGTATCCTTCAGAACACCTTTTGTgtcccacagaagaaagaaaaacatacagatttggaatgtaagtaaatgatgacaacgTTTTCATTTCTAGGGGTTTTTTTTACGCATCCGGTTTGTCTGAAATGTGTGTTGTAATGCGCAATGCAAGACTGTTTCCGTGCAGTGCAGAAAGTGGCAAGTTCATTGTACAGAAGCTACAGGATAAAAccagcaatttatttatttatacctgGTGCATCAATCAAATCAGTGCATGAACCTCATTTGCTTGTCATACTTGATTCGAAAAGAAAAAACGAAACATGTTTAGCGACTGAAACCTGAAAACCtagtttgctgtatttttatttttttatttcgtgtATGATAGCATGACTTGAAGGATGGACTGAATGGAAAAGCGCATCGCTGTCAGTGTGCCACGTTACGCTGACGCTCGCAAATGCTTAGGTTAGTAGTAGATTAGCTCTTCTCTTATGTACTGATATATAAAAGTGTATCAAAAGACTTGAAAATGGTAGAAGCGTTTCTCATTAAACATTTCAGGGTTTTTCGTTAGTAAGACgtgaattaaattgtaattctgAATTTGGAATCTTAATGAAATGAAACGAGTAGATAGAGATTTAATAGTGACTTATATGAGTATAACTTAAACTGAAGTGGAACTTAAAACGTTAAAATCAGCTCACATAGCATATTTAAAGGTTGCTGTTTGGTCGGAGAAAGAAAGCTGTTAAAGATTACGTATGAAGGTTTTAGCATCCTCTATGCCTTTAACCCTCTTTCTGCCTTTATCTGCGACCCCTAATCAAACATTAAAGCAGaatgaagtctttttttttttttttcttcagagatTTCCCTTTTAGAGTATCAATATTTGATGTTCTGTGCCCACACAGGACATGCTATTGATATTAGGGTTTCgcttttacataattattttatgttttttctatatgtatgcattattaatattccaGTTTTACGACCTTGAAGGTAATGCCACTTAAACTGTGACCGGCGCATATGAAGTGTGAAGATATACCGCTATGTTTACCATGTGAGATTTATTTCGCACACATTTTTCAATCATTGTGACTTATATCCAAACTGtgctttttgtatttgttttgccgttttttttttttttttttttttttttgaaggatgtTATGTGTTGGATTGTTTCTCAGATTGCATTATCTGTTGTGCATTTGCAGTTCTTAATCTTCGGTTAAAGTTAATTTGTAAAGGGTGTGTGAAAGGCTATTGAGCGTCAAAGGGATGAGAATTCCAGAGAGTCATTTATCTAATGGATGCATTAGGCCTGTTATTGTAATGAACACTTACATACTTCAAGTTCAGTTGCACACAGTCACACCGTTAAACgtgttacaattttaaaatcagatttgaCTGTTTTATACCATTGGTTTGCCAGCATATGTGCACAATATTGTATCTATGTTTGAAAGTTGAATGGAGTGGGTCAAAGGCTAAGGAAAAATAAACTTGTCTTTTAATGACTGTCAA

Function

GO: NA

KEGG:

id description
K22449 TBCEL; tubulin-specific chaperone cofactor E-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156685 lncRNA downstream 49914 12219101 ~ 12220645 (-) True G106049
TU156616 lncRNA downstream 173068 12096938 ~ 12097491 (-) True G106028
TU156615 lncRNA downstream 173123 12096892 ~ 12097436 (-) False G106028
TU156601 lncRNA downstream 236987 12030649 ~ 12033572 (-) True chp2
TU156596 lncRNA downstream 250111 12016398 ~ 12020448 (-) True G106015
TU156707 lncRNA upstream 9318 12289479 ~ 12290045 (-) False LOC122359155
TU156711 lncRNA upstream 119926 12400087 ~ 12401495 (-) True G106070
TU156722 lncRNA upstream 148177 12428338 ~ 12428589 (-) True G106079
TU156725 lncRNA upstream 151750 12431911 ~ 12447046 (-) True G106081
TU156737 lncRNA upstream 235515 12515676 ~ 12516324 (-) True G106092
XM_043259397.1 mRNA downstream 513 12247981 ~ 12270046 (-) True usp2a
XM_043259398.1 mRNA downstream 2337 12247981 ~ 12268222 (-) False usp2a
XM_043259396.1 mRNA downstream 2337 12247981 ~ 12268222 (-) False usp2a
XM_043259399.1 mRNA downstream 13533 12247981 ~ 12257026 (-) False usp2a
XM_043259400.1 mRNA downstream 13535 12247981 ~ 12257024 (-) False usp2a
XM_043259377.1 mRNA upstream 130 12280291 ~ 12290052 (-) False LOC122359155
XM_043259375.1 mRNA upstream 130 12280291 ~ 12290045 (-) True LOC122359155
XM_043259376.1 mRNA upstream 130 12280291 ~ 12290044 (-) False LOC122359155
XM_043259379.1 mRNA upstream 130 12280291 ~ 12289188 (-) False LOC122359155
XM_043259380.1 mRNA upstream 130 12280291 ~ 12289186 (-) False LOC122359155
TU156053 other downstream 764382 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 913011 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 938661 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 965997 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1177846 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 1175820 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1466875 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1598424 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1603759 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1639908 13920069 ~ 13925707 (-) False cluha

Expression Profile