RNA id: XM_043259399.1


Basic Information

Item Value
RNA id XM_043259399.1
length 2477
RNA type mRNA
GC content 0.48
exon number 12
gene id usp2a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12247981 ~ 12270046 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACTGTAGTGAAAAGACATGGGTCCGCGAGCTGCCTCCAGCCTGCAATCTGACAGCTCCGCTTTCCCTTCAGAGCGCCGCACTATCTGCTTCGACACGTGAGGGGATTTCTTCTTTGCGTTTGCGAGCAACGTTCTACGTTTACTGTTTCGTGAGTAGCGTTTCGGTTGCAGAGAGTCGGTCCGCGCGCGATGTTTCATCCGTACCCGTCGCTGCCTCGCGCCGCTGTAGAGGTCGTTTCCTGATCGAGTTGCTGAGCCCGAACGCCCTGGAATATTTGATACGGGATCGTCCATAATTGCTGTTTGGTAAAGTTAGTGTTTATACACCGCAGAAGGATTTTACCCATTATGCCAAGCATGCGACATTCATATACAGTTACATTACCAGAGGAGCCACCTGCGACTGCGTTCCCCCTCCTAAAACAGGACATGCGGAGGAAAAGCTCTACTATGTCCGGCTCCATGCTGGTCTCCACATTTGTTGGACTTCTGATTAATCATGCCAAGaactCAAAGAGTGCCCAGGGCCTGGTGGGGCTTCGTAATCTGGGAAATACATGTTTTATGAACTCCATCCTCCAGTGTCTAAGCAACACACAGAGCCTGCGAGACTACTGTCTTCACAACTCCCACCGCCGAGACCTCAACAACAACAGCCGCACAAACACTGCTCTCATGGAAGAGTTTGCCAAGCTTATCCAGACAATGTGGACTTCTTCAAGCAGTGAAGCCGTCAGTCCCTCTGAGTTCAAAACACAGATTCAGAGATACGCCCCCAGATTTGTGGGCTACAATCAACAGGATGCTCAGGAGTTTCTACGTTTCCTGCTAGACGGACTGCACAACGAAGTGAACAGGGTCACGGTCCGGCCGCGGGGAAACATGGAAGACTTTGATCACTTGCCTGAtgaagaaaaagggaaaaagatgTGGACTAAGTACTTAGAGAGAGAAGACAGCAAAATCGTTGATCTGTTCGTAGGCCAGCTGAAGAGCTCTTTGACCTGCAGTGAATGTGGCTATTGTTCCACTGTGTTCGATCCCTTCTGGGATCTTTCCTTACCTATCGCCAAGAAGGGCTTTGGAGAGGTGAGCCTAATGGACTGCATGCGGCTTTTTACTAAAGAAGACGTGCTGGATGGGGATGAGAAGCCGACGTGTTACCGGTGCAAAGCCAGAAGACGATGTACAAAGAAATTTACAGTTCAGAAGTTTCCTAAAATACTAGTTCTTCATCTGAAGCGCTTCTCTGAAGCCCGTGTCAGAACCAGCAAGCTGTCCACTTTTGTCAACTTCCCAATGAAAGACCTGGACCTCAGGGAGTTCGCCTCTGACAGAAGCAGCAGTGCAGTATACAACTTGTATGCAGTGTCCAATCACTCAGGCACGACTATGGGAGGCCACTACACAGCGTACTGTTGCAATCCTGAAAACGGGGAATGGTACACATATAACGACTCCAGAGTCACGCCAATGTCCGCCAGCCAAGTTCGCAGCAGCGACGCCTATGTGTTGTTCTACGAGCGGGCGGGACTCTGAAGACGGACCTAGACTCGAAGCCTTTGGGCTGAAGTCACGTGACACACTATGCCGCTTCCTCCTGGCCGTCTTGGAGAAGGAACATCGCTCTCTGCCGGTCACTGGGAGAAGCGCACACAATGCCCTCTCACGCTCCGCCGCTGTGTTAAAGAGGTCCTCGCGCCTCCGTGTGtacgtgtgcatgtgtgtgtgtgtgtgtgtgagggcagCTCGTCATCAGGCAATAACCCAAGTGGCTCCGACTCAGACGTCTCTCTATGCACCGCAACCAAACCCTCATCCCGATGCGCCTTCCTCTCGATCAAGAACGCCTCAATATTAAAAACTTAACGTTTCACttgattcttgtttttttttttttgtaagtataCGTCCTTCCAGATACCCTGGGAGATGAACTGGTTAAAGGTGCGCTGTTCTGGCCTGATGCAGTACTCCTTGTTCTTTTCATCACCGTCTTTGGTCCCGTTCACCCCCACCCATCATCTTCTCTGTATGCTTTGTTCTCTCCTCCACTTTCTGAGGGAGTCACGGGAGTTTGTTGTGAAAGTCTGTGGTGGTGAGAGAACGGCGTGTGCCGTGACTTTTATTCAGTGTGGCTGCTACTGATCTTTGAAATGCTGTGAATGGAAATGAGGACGGGAGGAGAGATGACGCCGACAGTATATGGATCCTTGATCTCATGCCATTGAACAACATGGAAAGAATGTTTTGCAAAAGaaaatctgtatatttttatatatgatgcAATATAGAGAATGTACTATATACAGTGGTGCTGAAAATGACCCGTTACTGTTGTCAGTTAATTTATCAGAGGTAAGAGAACGGCATCTATTTATGCTTACAGGTCAGGAGACGATGTGATACaagtcaaagtaaaaaaatatatatatatgtatgaataaatTTTAGAAGAATGAACTGTTAACAATC

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156685 lncRNA downstream 27336 12219101 ~ 12220645 (-) True G106049
TU156616 lncRNA downstream 150490 12096938 ~ 12097491 (-) True G106028
TU156615 lncRNA downstream 150545 12096892 ~ 12097436 (-) False G106028
TU156601 lncRNA downstream 214409 12030649 ~ 12033572 (-) True chp2
TU156596 lncRNA downstream 227533 12016398 ~ 12020448 (-) True G106015
TU156707 lncRNA upstream 32453 12289479 ~ 12290045 (-) False LOC122359155
TU156711 lncRNA upstream 143061 12400087 ~ 12401495 (-) True G106070
TU156722 lncRNA upstream 171312 12428338 ~ 12428589 (-) True G106079
TU156725 lncRNA upstream 174885 12431911 ~ 12447046 (-) True G106081
TU156737 lncRNA upstream 258650 12515676 ~ 12516324 (-) True G106092
XM_043259412.1 mRNA downstream 252 12245725 ~ 12247729 (-) True LOC122359167
XM_043259226.1 mRNA downstream 37406 12206406 ~ 12210575 (-) True aldh3a2a
XM_043259227.1 mRNA downstream 41654 12199932 ~ 12206327 (-) True aldh3a1
XM_043258603.1 mRNA downstream 68178 12144439 ~ 12179803 (-) True tpst1
XM_043259404.1 mRNA upstream 13533 12270559 ~ 12280161 (-) False tbcela
XM_043259402.1 mRNA upstream 13533 12270559 ~ 12280161 (-) False tbcela
XM_043259403.1 mRNA upstream 13533 12270559 ~ 12280161 (-) True tbcela
XM_043259377.1 mRNA upstream 23265 12280291 ~ 12290052 (-) False LOC122359155
XM_043259375.1 mRNA upstream 23265 12280291 ~ 12290045 (-) True LOC122359155
TU156053 other downstream 741804 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 890433 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 916083 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 943419 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1155268 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 1198955 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1490010 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1621559 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1626894 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1663043 13920069 ~ 13925707 (-) False cluha

Expression Profile