RNA id: XM_043259412.1


Basic Information

Item Value
RNA id XM_043259412.1
length 1913
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122359167
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12245725 ~ 12247729 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGTCCTGTAAAGATTCCTGAAAGCGATAGGTTATAGGTGTAGAGTTTGTGTAATGTGATagaaatacagtttgtacagaataaaaaccaTTAGAGACTTCTTATAAACCAAAAACCAACGTGTGTGTAGagaacattttacaataaggtaaTATCTACATTTAATGTGTTAACTAATAATGAGCAATACattattacagtgtttattgtttataatgttaattaataaaaacagccGTTCATTGTTAGACCATACTAACTCAGGTCaattaaataacagtaataaattcaacttttaatattaatatatacaacttttaatattaatatgagaCCACAATTAAGATTTTCCCTATTTATAAGtatttttcatcatattttacttgtatgatattcatattttgtagtaattttgttcatttatgctTTGCACGTTTGGGTTAATTGTTATATagtttaacttattttttcgtttctgttttagttttaataattcagttatATACACAATGACTTGAACATCATTTAAACTGATGAAGTAAAAATGTTGACACTGCCGCAGTGTCCTCTGAGGCGGGGCACaacaaaattaatacttttaaggTATGTGAGGGAAAAATATCAACGTACCGTAACGAGAGACATGAGACCCAATTGTACCCCATCTGTGAAAACAACCAGAAGTCTTGAGTCCTTATCAGGCCCTCAGGTTTTTTATAAGCCACCTGACTGACCCTTCCCTGACAAAACATGTGCGTCACGATGTAAATGACTTACACAGAACTAAGAAGTGAACTTTGAGACAGAAAACAGTCTAATACGCAGCTAAACAAACAGTTAAGCGGATGTGTGTGACAAATTAAGGAGGAGGACTGAGGAATGCTCTGAAACATTTGAAGAATGGCAGTGAGCACTGCATATGTCGGTTCAGAGGGGGATGCTCTGATGGGACTCGTGCTGCTGGGTCGAAGGCGAGCTGGTAAGAGCTCTCTGGGAGACGTCCTCCTCGGACGCAGCGAGTTTGAGCCCGGGAAGAAGACGACGCGGTGTGTGAGGAGATTCGGCTGGGTGGAGGGCTCGAGGCTGGCTGTACTGGACACCCCGGGATGGAGTCTCTTCGGTTTGGCCGACGCCGGGTCGGTGAAGCGGGAGATCCTGCGCAGCGTGATGCTGGCTCCTCCCGGGTGCCTCGTGTTTCTCCTCGTTATCCCCGTGGACTCTTTCAGCAAGCGGGACGGCCGCGCTGTGGAGAAGTATCTGGGTGTCCTCGGGGGCATGGTGTGGACGCGCACGCTGGTGCTCTTCACGTGGGGCGACGAGTTAAAAGGCGGCGCTATTGAAAAGCACATTCAAAAGGAGGGAGAGCCTCTGCGGGAGATCCTGAGGAAATGTGGACACCGGTACCATGTTGTGAACAATAAATGCCTGGAAGACTTTAATCAGGTCACTGAGCTGCTTAACATTTTGAAGCAAATGTGTGCCAGGACTGGTTGAACGTAGACTGTAACGTGTTTTAGGCCTTTGAAAtgtaatactgttttttttagcttttcatTAATGTTTCCATTTTATATAGATAGACAATGCCTAATGCTAAAAAGATGTTTACTGCGACATTTAGAGGAATgtgatcagtttttttttatcttgtgaAGGCCAATATTGCagtcttttttacattttaaataatttcacaatCATTTTGATGGTTCACTGACTTGTAATGAAGTGAGTTGATTCTGGTTGTGGGAGTAAGTGTCAGCTTTCATTCAATTTAGTTGGTTTTGTGTGTCCATGTTCCCCTAAAGTGCTGGTGTTGATGAGGCAGTTGTTTGTAATTAGGATTTGCGTTCAACTCAAAGCTCAGTTTTAGTGTTAagtgtcaaaaataaagtttttttcaaaattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156685 lncRNA downstream 25080 12219101 ~ 12220645 (-) True G106049
TU156616 lncRNA downstream 148234 12096938 ~ 12097491 (-) True G106028
TU156615 lncRNA downstream 148289 12096892 ~ 12097436 (-) False G106028
TU156601 lncRNA downstream 212153 12030649 ~ 12033572 (-) True chp2
TU156596 lncRNA downstream 225277 12016398 ~ 12020448 (-) True G106015
TU156707 lncRNA upstream 41750 12289479 ~ 12290045 (-) False LOC122359155
TU156711 lncRNA upstream 152358 12400087 ~ 12401495 (-) True G106070
TU156722 lncRNA upstream 180609 12428338 ~ 12428589 (-) True G106079
TU156725 lncRNA upstream 184182 12431911 ~ 12447046 (-) True G106081
TU156737 lncRNA upstream 267947 12515676 ~ 12516324 (-) True G106092
XM_043259226.1 mRNA downstream 35150 12206406 ~ 12210575 (-) True aldh3a2a
XM_043259227.1 mRNA downstream 39398 12199932 ~ 12206327 (-) True aldh3a1
XM_043258603.1 mRNA downstream 65922 12144439 ~ 12179803 (-) True tpst1
XM_043258604.1 mRNA downstream 65923 12144439 ~ 12179802 (-) False tpst1
XM_043259547.1 mRNA downstream 152553 12070301 ~ 12093172 (-) True timm50
XM_043259397.1 mRNA upstream 252 12247981 ~ 12270046 (-) True usp2a
XM_043259398.1 mRNA upstream 252 12247981 ~ 12268222 (-) False usp2a
XM_043259396.1 mRNA upstream 252 12247981 ~ 12268222 (-) False usp2a
XM_043259399.1 mRNA upstream 252 12247981 ~ 12257026 (-) False usp2a
XM_043259400.1 mRNA upstream 252 12247981 ~ 12257024 (-) False usp2a
TU156053 other downstream 739548 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 888177 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 913827 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 941163 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1153012 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 1208252 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1499307 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1630856 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1636191 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1672340 13920069 ~ 13925707 (-) False cluha

Expression Profile