RNA id: XM_043258603.1


Basic Information

Item Value
RNA id XM_043258603.1
length 2460
RNA type mRNA
GC content 0.50
exon number 6
gene id tpst1
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12144439 ~ 12179803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACGAAAGACCGTCGTTTATGATTCGCTCAGAGGATATTTCGCCTCAGTTACTTAGATATAaattcacacatttaaaatagtcGTCTAACGCGATCGCGCGACTTCACAATCGGCCAATAAAAGGCACTTGTTTGAGACAGCGCACTCATAAAAGCCTCGATGCAAGGTTGAGTCGAAACAACGCGCATCTGGCAACCCAGCGAAGGTGACGCGCGTCGATGCGATACAGTTGTGTGGAGCGCAGCGTCGAGACGTTCACAGAGTGTCGCATTTTAAAGCGGTGAATGGAACGCCTCAAGCGAACGGCACGTCTGTGCGTTCGTCCCCGACCGCAAAGAGTTCTTGTGTAACCCGCTCGTCGTCTGTCGTGACGGATCTACCGAACCAGGCCTGATGGATTCAGGTACTCGACGAGAGCTGCGTGCAGCAGATCCCAGCCTCCACTCGCTCCGTCACGGCCAGTCCTGAGTACCGGGCGTTCACCACAACCTCACCTTCCCTTTTTCTGCTTCTTCCCCGTCTCACTCCACCCCTGGCTCCTCAACCGGGCCTCCGGCTCACCCCCGAGATGATCGGCAAGCTGAAGCAGAACTTACTGGTGGCCTGCTTGGTCATCAGCTCCGTCACGGTCTTCTACCTGGGTCGGCATGCCATGGAGTGCCATCACCGGATAGAGGAGCGCAACCTGCCCCTGGTGAGCAGCCTGCGCACCACCCTGCGCACGGGCCACAACCTCAGCACCCCCTTCATCTACAATAAAGACATGCCTCTCATATTCATCGGTGGCGTCCCTCGAAGCGGCACCACTCTTATGCGGGCCATGCTGGACGCTCATCCCGAAGTGCGCTGTGGAGAAGAAACACGTGTCATCCCTCGCATTCTGGCCATGAAGCAGATGTGGAGCCGCTCCGGCCGGGAGAAAATGCGGCTAGATGAAGCCGGAGTAACAGACGAGGTCTTGGACTCAGCCATGCAAGCTTTCCTTCTGGAGATCATCGTAAAACATGGGGAACCGGCCAACTACCTGTGTAATAAAGACCCGTTTGCTCTTAAATCACTCACTTATCTGGCTAAGATCTTTCCTCACGCTAAGTTCATCCTCATGATCCGTGACGGCAGGGCCTCTGTCCACTCCATGATCTCCCGTAAAGTCACCATCGCCGGGTTTGACTTGAGCAGCTATCGGGACTGCCTGACAAAGTGGAACCGGGCCATAGAGACAATGTACACTCAGTGTTTGGAGGCAGCGGACAAGTGCCTGCCTGTGCACTACGAACAGCTCGTCCTGCACCCGGAAAAGTGGATGAGAACGCTTCTGAAATTCCTGAACATTCCTTGGAATGATGCAGTTCTGCATCACGAGGAGCTCATCGGGAAAGCAGGAGGCGTTTCGCTCTCCAAGGTAGAGAGATCTACAGACCAGGTGATCAAGCCCGTAAACGTGGAGGCCTTATCCAAGTGGGTGGGTAAGATCCCCCCAGATGTGCTGCGGGACATGCCTGTCATCGCCCCCATGCTGGCCCGGCTCGGCTACGATCCCCACGCCAACCCTCCCAACTACGGCCGGCCCGACCCCCTCGTCCTGGATAACACTAGAAGAGTCTTTAAGGGTGAATTTCAGCTACCTGATTTTCTTAAAGAACAAACACAGCTTCAGAAGTCTCCAGAAAAGCCAAACCCAAGTTAGGAGGAAAAGACCAGAGCTTTATCAATACAAGGCTGAGTAGAAGCAGATGCCGTGGGACCATGATGGACTTGCGTCACCCCCGCTACGCTGGGACCTCCATGCATGGAAacacttacacaaacacacacacaaacacacacacacacacaggcctctGTCTGGACCCGGACCACTCTTTAGAGGACAGTTTTGGCCTTTGATGTTGTACTGTAACAATTGTGGCCTAAGAATGTCATTGTTGTTctaaattttgtgttttattcttttattttatttttttttaactcttttccACACTGTACTctaagttttattaattttcctGGCTACACAAACCTGTGATTCTGTTATAAGAAAATACAGTGGTTTTAATTAGCAGCGAGGAAATATTTATGGAGGAGCGTTAGCTTTAGAAGAcgctattttaatgtttttttttacattttcatgccTTCGTAACGTGCAATTCCTTGGGTACTGAATGATGTGCAAGACTCGGATCTTGTGTAGAGATAGACATGCATTTTGTTCTCTGCATTCACAATGGAGTGACCTTATGTACATTGAGAGCTGTAATAAATGAGCTGCCGGTGTTGAACAGAAGAGGCTCATTGACATTTTCTCCATTGGCAGAGGAGCGCACATCGGtgatgtttgttgttgtttttacgattgttatttttgtacttaagtgtaaatCATAATTATGTACTCTTTTATTTCTTTCGATTAAATAAACCCCGAGCGCTGTTGGCAGCCAATGTGCTGAAA

Function

GO:

id name namespace
GO:0006478 peptidyl-tyrosine sulfation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008476 protein-tyrosine sulfotransferase activity molecular_function

KEGG:

id description
K01021 TPST; protein-tyrosine sulfotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156616 lncRNA downstream 46948 12096938 ~ 12097491 (-) True G106028
TU156615 lncRNA downstream 47003 12096892 ~ 12097436 (-) False G106028
TU156576 lncRNA downstream 101417 11951281 ~ 12043022 (-) True G106001
TU156601 lncRNA downstream 110867 12030649 ~ 12033572 (-) True chp2
TU156596 lncRNA downstream 123991 12016398 ~ 12020448 (-) True G106015
TU156685 lncRNA upstream 39298 12219101 ~ 12220645 (-) True G106049
TU156707 lncRNA upstream 109676 12289479 ~ 12290045 (-) False LOC122359155
TU156711 lncRNA upstream 220284 12400087 ~ 12401495 (-) True G106070
TU156722 lncRNA upstream 248535 12428338 ~ 12428589 (-) True G106079
TU156725 lncRNA upstream 252108 12431911 ~ 12447046 (-) True G106081
XM_043259547.1 mRNA downstream 51267 12070301 ~ 12093172 (-) True timm50
XM_043259305.1 mRNA downstream 78721 12060861 ~ 12065718 (-) True dlc
XM_043258589.1 mRNA downstream 110845 12030648 ~ 12033594 (-) False chp2
XM_043258588.1 mRNA downstream 117979 12023064 ~ 12026460 (-) True rnaset2l
XM_043258916.1 mRNA downstream 200865 11932931 ~ 11943574 (-) True ppp1r14ab
XM_043259227.1 mRNA upstream 20129 12199932 ~ 12206327 (-) True aldh3a1
XM_043259226.1 mRNA upstream 26603 12206406 ~ 12210575 (-) True aldh3a2a
XM_043259412.1 mRNA upstream 65922 12245725 ~ 12247729 (-) True LOC122359167
XM_043259397.1 mRNA upstream 68178 12247981 ~ 12270046 (-) True usp2a
XM_043259398.1 mRNA upstream 68178 12247981 ~ 12268222 (-) False usp2a
TU156053 other downstream 638262 11464775 ~ 11506177 (-) False igsf9ba
TU156138 other downstream 786891 11353841 ~ 11357548 (-) False LOC122358627
TU156125 other downstream 812541 11329902 ~ 11331898 (-) False LOC122358625
TU156117 other downstream 839877 11303421 ~ 11304562 (-) False LOC122358622
TU156055 other downstream 1051726 11085819 ~ 11092713 (-) False igsf9ba
XR_006252707.1 other upstream 1276178 13455981 ~ 13461103 (-) False ercc2
TU157426 other upstream 1567233 13747036 ~ 13749209 (-) False LOC122359192
TU157457 other upstream 1698782 13878585 ~ 13881694 (-) True G106570
TU157458 other upstream 1704117 13883920 ~ 13905494 (-) True G106571
TU157450 other upstream 1740266 13920069 ~ 13925707 (-) False cluha

Expression Profile