RNA id: XM_043220558.1


Basic Information

Item Value
RNA id XM_043220558.1
length 1408
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC122325522
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26140448 ~ 26144419 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTCAAGTTACGGATAGGTTCAGGTATCGAACAATGGTTCCAAATTTCTAAGAACCGGgtgaatTGGAGTAATCTGCCCCAGAGTCCTCAGAACATTCAGCAGCTGGTTCAAcaacagccacccagccagaagcccagccagtgggttaagcagccagttcaacagcagccacccagccagtggaTTAAGAagccagttcaacagcagccacccagccagtgggttaaacagccagttcaacagcagccacccagccagctGGTTCAACAACCTAACCAGCAGTTTCCCCTTCAGAAGCCAGTGGCACAGACGGAGCCCCTTGATAAGTGTACTGTAGCTGATTATGATCAGATCCCATGTGGACAACCTGGGATCAGTGGTGCTGAGTGTAACGCTATCAACTGCTGCTTTGATGGGCAGCAATGCTTCTATGGAAGGGCAGTGACTGTCCAGTGTATTCGAGATGGTCAGTTTGTGGTAGTGGTCGCTAGAGATGTTACTGTGCCTCAACTGAGTCTGGATTCGGTTCGTCTACTGGGTGGAAGTGACCCGCCTTGCGCTCCTGTGGATTCCACACCTTCCTTTGCTATATACCAGTTCCCTGTGACCGCATGTGGCACGAGCATGATGGAGGACAGTGGATATGTGGTGTATGAGAACAGAATGACCTCCTCATACGAAGTTGGCGTTGGACCACTTGGATCCATCACGAGGGACAGTCACTTTGAGCTTCTCTTCCAGTGCAGATACTCTGGAACATCTGTGGAAGCTCTGGTTGTGGAGGTCAACTCtgttcctccacctccaccagtAGCTGCTCCTGGACCTCTCAGGGTGGAGCTCAGACTGGCCAATGGCCAGTGTGTCACCAAGGGCTGTGCTGAAGGGGATGAGGCCTACACGTCCTACTACAGTGACGCTGATTATCCCGTCACAAAAGTCCTGCGGGAGCCTGTGTATGTTGAAGTGCACATTATGGAGAGGACTGACCCCAACATTATCCTGATGCTGGGACATTGCTGGGCGACCTCCACCTCCAGTCCACTCAGTCTGCCCCAGTGGGACCTTCTGATTGATGGATGCCCTTACCAGGATGACCGTTATCTGACCACATTGGTTCCAGTAACTGGATCATCTGGTGTGCAGTTCCCGACCCACTACAAGCGCTTTGTTGTGAAGATGTTTACGTTTGTAGATCCAACCTCACTGGCTCCTCTGCAGGAAACGATCTTCATCCACTGCAGTACAGCGGTGTGCCATCCGTCTTCTGGCTCTTGTGAGCAAAGCTGCACCAGGAAACgAAGAGCTACTCCTATCCAGGCCATCTTTGGTGAACCAACTGTGGTTTCTAGTGGACAAGTTACTCTAGTCATGTAAATCTAGTTGTtgttggtttggttttttt

Function

GO: NA

KEGG:

id description
K19926 ZP1; zona pellucida sperm-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210159 lncRNA downstream 49995 26088456 ~ 26090453 (-) False pgfa
TU210160 lncRNA downstream 49995 26088456 ~ 26090453 (-) False pgfa
TU210161 lncRNA downstream 49995 26088456 ~ 26090453 (-) False pgfa
TU210064 lncRNA downstream 63375 26021487 ~ 26077073 (-) True G142247
TU210059 lncRNA downstream 84883 26018719 ~ 26055565 (-) True G142242
TU210146 lncRNA upstream 5472 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 24115 26168534 ~ 26174879 (-) True G142273
TU210177 lncRNA upstream 45644 26190063 ~ 26191918 (-) True G142282
TU210174 lncRNA upstream 85887 26230306 ~ 26231483 (-) True G142280
TU210170 lncRNA upstream 87605 26232024 ~ 26232545 (-) False G142278
XM_043219108.1 mRNA downstream 5655 26132560 ~ 26134793 (-) True LOC122324577
XM_043219109.1 mRNA downstream 15000 26123353 ~ 26125448 (-) True LOC122324578
XM_043219107.1 mRNA downstream 26724 26111476 ~ 26113724 (-) True LOC122324575
XM_043219110.1 mRNA downstream 37225 26101333 ~ 26103223 (-) True LOC122324579
XM_043218797.1 mRNA downstream 43477 26088415 ~ 26096971 (-) False pgfa
XM_043220559.1 mRNA upstream 5472 26149891 ~ 26152523 (-) True LOC122325523
XM_043220560.1 mRNA upstream 14747 26159166 ~ 26163051 (-) True LOC122325524
XM_043220561.1 mRNA upstream 24115 26168534 ~ 26176070 (-) True LOC122325525
XM_043220325.1 mRNA upstream 32482 26176901 ~ 26184090 (-) True actr10
XM_043219656.1 mRNA upstream 53160 26197579 ~ 26211185 (-) True LOC122324910
XR_006247174.1 other downstream 43477 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other downstream 43477 26088415 ~ 26096971 (-) True pgfa
XR_006247180.1 other downstream 86079 26052206 ~ 26054369 (-) False LOC122324466
TU210175 other upstream 41241 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 87605 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 470224 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210476 other upstream 778396 26922815 ~ 26924987 (-) True G142444
TU210568 other upstream 1085384 27229803 ~ 27256258 (-) False LOC122325335

Expression Profile