RNA id: XM_043224057.1


Basic Information

Item Value
RNA id XM_043224057.1
length 2622
RNA type mRNA
GC content 0.47
exon number 5
gene id samd10b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4580543 ~ 4633899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGGCGTGCTTTATGGCACGGCTTCGTGCCGTCGTTCGTCTCCAGGGCTTGTGTAACCGGTGAGAGCGCGCTCGGCAGCACCAAGGTGAGAAAGCGGAGGGAGGGGTTTAAACTTGCCCGAGGCTTTGGGAGCCGAGCGACTGTCATCCCTCTCTCCTTGGGGTTTATATGTGGACGCTTGCGCTGATTTCTCCTGCTCCGCGGCAGACCCGTGCGCTCGGTAGTGTCGTTCAGGAGCACCGGCTCTCTCTTCCACCGGACCGGACCATGGCAGACACCCACTGAAGCCATCACGGAGAGATACGCGTTTGTACCGACTATGGCTGTAGACGCTGCGTCCAGCTTCAGCTTCTGTCGGGCTGCGCTGGAGCACACAGTCTCAGCAGAGGAGCTCAACTATCAGCTGCCACGCAAGGCCGGGGGCAACCTGACCTGGCATGAAGGACGCGGGCAGAGGGTGACGAGGAGGACCGTCAAACTGCTGCAGCAGCCCGGGACAGAAGGAATACAGATCCAGCCAGGAGAGGCCTTCACTGTGTACCACACCAGCCCAACGCTGTCCAGCTTATGCAAACCAGTGGTGCTTTGGACCCAGCAGGACGTGTGTAAGTGGCTGAAGAAACACTGTCCTCACAACTACCTGACGTATGTGGAGGCCTTCTCTCACCACGCCATCACAGGTCGTGCCCTGTTGCGGTTGAACGGAGAGAAGCTGCAGAGAATGGGTATAATCCAAGAGACACTGAGACAGGAAGTCCTGCAGCAGGTCCTACAGCTTCAGGTCAGAGAGGAAGTGCGTAACCTACAGCTGCTCAGCAGAGCTTCCTTCGGCAACATTTCATAGCTCGTCTATCCTTTTGGCGGCTCTCTCGACTTCCCGGCAGATACGGGAGGACTTGTTCCAAAAGGCTACAGACAGAAATAGAGAGAGCAGAAATCTGCCCGGCGGTGGAGCTGTGGACTGATAACTCAACACCAGTTTAACAGACAGGACCGTCTTTTTATGCAGATCTGATCGGGACTCAAAAGGACAAAGTCGGACTCTAAAACTGTAATATAGTGATAAGATTCAAGTCTCACCTCATCTCTACAAAACCTAGCTCTGTCAGACAACAGTTGAGCATTGGGTCAAGAATTTTGACTTTAAGAAGTTGACTCCCAATCAGAAGACGAACGCTGATCTCAGATCAATTCAGAGCAGTTCATCTCATCTAGTGTTGGGATGTCTGACAGACCTGCTTTTTTTTCACTCGTGGACGTAGATGCAATGCTGAAGAAATCCTGTTTCTACAAGTGCGGGAACGTACTATTCCTTCTCCTACCTCTCACGATAGATTGTATCATTTCATTCGCAGAGAATTAGATGTAAGGCATGAAGTTTGATTATCCAACATCTTCCCGTTCAAGCTAAGGGGATGTTCACGCcgacaaaaaaacacagactaCATGATCTGAAACTGGATATTATGgacagtttgtttaaaaaaacgaatgaaTGTTAATAACATCAGATGCACACAACCATCGTTTGGCTTTTCTTCTCAGGACGTTCAAAAGCTGTACATTGTTCCTGCTGTTACCCTCATAAATTATATTCTCGATTTCACTGTCCTTTATAAAATCTTGCACACGACGTAGCAGGTTTTCTCCTAATATACAAAGAATATATCAGAGTACGAATATACCTTTGCTCTAGGAGTTAGAGTACATGTCTAGATCACTCGTAGAAGTCCCCGTCGTCCGAGCAATAATGTAAAGAGGTGCCACGTGTCTGCATGGCTGGAGACGAAATTTAGTTCTGCAACATACTCTACGCAAGCAAACGCTTACATCAATTCGGTGTTGCGTTGAATCCACATCACACTTCAAGTACAGTTAAAGTTTTCTCTTTCAGGTCAAGTGGAGATTGAAGAGAACACCAAATAGTCGTTGGTTTCTATGGATGAGTGTGTTGGTGTTTGTTGGGTCGGCGCGGACGAGGCTGTGTTGTTATTTCCGGCATAATAATCCAAAAGCTAACTTTTAATGTTTGTAGGCTGTGTGACCTAGGATTTTGAGCAATGAGGTTTGTTATGTCCAAGAACTCAAGGGGACATGTTAAGTATGTACCGTACAGAGACCGTTTGTTTCCTCTGGCGTGATAAAGGAGCTTTTGCGGAGAGAATCGAATTCTTTCCTTATTGTGATTTTGTCTTTATTAGTGCTGATGAATCCCGAACGCTTCGACACTCGAGTACACTGTGACGCAGTGGCGTGTTTAAGGAAAGCTTGAACGTTGCTGTATTACAATGCGGTCATTGTTCAAGGCTTTTACGCAACGCACTCAAAGCTGACGGAAATCTGACACGAACCATTTCAGTCCATTCAGGTTAGAAAcgtttgtgtgagagagttcTCTCTGACGTAATGATAGATGGGTTTCCAGAGCGTTTCGCTGATTCGTGCATTCTGACACGCTCTCTTCAGACAtgcaatgggtttttttttatcttgttatgCAAAAATGTGAGGGGAAATGAACATTGGTTACGTAATGACTTGGAACCAGCGTGATTATACAAGAAATGGCGTGGCAAAGACAGCTGTATGCGTGTGTTTTGGAATAAAGTTTTCTAAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229422 lncRNA upstream 27375 4551033 ~ 4553168 (+) True G154934
TU229284 lncRNA upstream 275111 4249319 ~ 4305432 (+) True G154837
TU229253 lncRNA upstream 418923 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA upstream 418923 4136398 ~ 4161620 (+) True G154815
TU229188 lncRNA upstream 531546 4048746 ~ 4048997 (+) True G154759
TU229475 lncRNA downstream 138091 4771990 ~ 4816862 (+) True G154972
TU229478 lncRNA downstream 183466 4817365 ~ 4835482 (+) True LOC122328459
TU229494 lncRNA downstream 202094 4835993 ~ 4838432 (+) True G154989
TU229506 lncRNA downstream 230426 4864325 ~ 4915121 (+) True G154997
TU229538 lncRNA downstream 342770 4976669 ~ 4977310 (+) True G155024
XM_043225283.1 mRNA upstream 41348 4531932 ~ 4539195 (+) True LOC122329078
XM_043225128.1 mRNA upstream 218115 4351699 ~ 4362428 (+) False si:ch211-117c9.5
XM_043225127.1 mRNA upstream 218115 4351702 ~ 4362428 (+) True si:ch211-117c9.5
XM_043225129.1 mRNA upstream 230615 4338200 ~ 4349928 (+) True p4htma
XM_043224441.1 mRNA upstream 296311 4269846 ~ 4284232 (+) True rbm38
XM_043225117.1 mRNA downstream 8027 4641926 ~ 4686806 (+) False znf512b
XM_043225116.1 mRNA downstream 8212 4642111 ~ 4686806 (+) True znf512b
XM_043224336.1 mRNA downstream 54994 4688893 ~ 4710337 (+) False uckl1b
XM_043224335.1 mRNA downstream 54994 4688893 ~ 4710337 (+) False uckl1b
XM_043224338.1 mRNA downstream 57433 4691332 ~ 4710337 (+) False uckl1b
TU229052 other upstream 883905 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 883905 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1570933 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1571065 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1623818 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 1958707 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2592095 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2665380 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3697842 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 3854187 8488086 ~ 8488641 (+) True G155799

Expression Profile