RNA id: XM_043225127.1


Basic Information

Item Value
RNA id XM_043225127.1
length 2822
RNA type mRNA
GC content 0.50
exon number 14
gene id si:ch211-117c9.5
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4351699 ~ 4362428 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACGCTGAGAGCCGAGCGCTGATGCTTAGAGCAGAGGAATATCCAGCGAGACGGGCGGCTGCCGCACACCTGCTTTTCCGTTATATCACTTCACCAAACCGGGAGATTCTTTAAGACCTATTATCATTCGTGGTTAACCAACATCCATGCGATTCTTCAGGCTTACCTTCAAGTGCTTTGTCGACTGCTTTTGAGACCCTTTTATTCCTCGTCTGCCGGCGACGCACGTCAATTATTATAATTCGGAGCTCAGTCTTGTCAGCAATCTATCGAGGATCAATTTTTACGCGAACAATCGGACGGCCATCCCGCGGAAAGGCACTGAGCCACGcgaattgaaaaaataataaaacgcgAGGAACCGTTATTCGTGAATTGTCGGGCGCGCGGCGCTCCTGCTGGCCGGCGCGCGGCATGTCGCCAGAAGAGCATTTCTCCAATGATGGCGGACCGTGTGAGGATGAATCTCAGGAGGAAGCAGAAGTCGCCCGTCCCTTGGTGTCAGAGACTGAGGGCTCCGGTGCAGAGGTTGCTGAGCCCAGTGTCTGCACGGGTTTGATGGAGGCAGGCCACCCCGCCGCAGAACTGGAGCATTCAGAACGACAAACCTGGAGCAGACAGATGGACTTCATCATGTCCTGTGTTGGATTTGCTGTTGGCCTTGGAAATGTCTGGAGATTTCCTTACCTCTGTTATAAGAACGGAGGAGGTGTGTTTCTGATCCCTTATATCCTGATGGTGTTTGTTGGAGGTGTCCCAGTGTTCTTCCTGGAGATCGCTCTGGGTCAGTTCATGAAGCAGGGTGGGGTGGCCACCTGGAACATCGCACCTCTTTTTAAAGGGCTTGGATTGGCATCGATGGTGATCGTGTTCTTCTGCAACACCTACTACATCATGGTTCTGGTGTGGGGCCTGTATTTTCTGGCTCACTCCTTCACCTCCCCTCTGCCGTGGGCCACCTGCGGACACGAGTGGAACACGGTCAACTGTACCACTAACTTCAGCCGTGTGTGTTTCAATCAGTCATCGTCCCCTTCCCCTCCCAAGATCTCCTCCCTCAACACAAGTGCCAGCTGCCTGGAGCCCACGGGTTTGCGATCATCTGTTATGGAGTTCTGGGaGCGTAAAGTCCTACGTCTCTCTGGAGGTTTGGACGAAGTGGGTGACATTAGCGGGTACATGGTCTTGTGTCTGCTTGCTACGTGGGTCATCGTTTACTTCTGCATCTGGAAGGGTGTTAAGTCCGCTGGAAAGgttgTGTATTTCACGGCTGTGTTCCCGTATCTAGTCCTGGTGGTCTTGTTTGTTCATGGCGTCTCACTGCCAGGAGCTCTCAATGGCATTATTTACTACCTGAAACCAGACTGGAGCAAACTCTCCGAGGCACAGGTATGGATTGATGCTGCCACACAGATCTTCTTTTCTTATGCCATCGGTCTGGGGGCCCTGACAGCTCTTGGGAGCTACAACCGATTCAACAACAACTGTTACCAGGATGCATTCATTCTGGCTCTCATAAACAGCGGCACAAGCTTCTTCGCAGGCTTTGTGGTTTTCTCAGTTTTGGGATTCATGGCAGCTGAGCAAGGCGTTGACATCAGCAATGTGGCAGAAAGCGgtCCTGGTTTAGCGTTTATTGCCTATCCAAAAGCCGTCTCGCTCATGCCTTTAGCGCCGCTGTGGGCGGTGCTCTTCTTTCTTATGCTTCTGGTCTTGGGACTGGACAGTCAGtttgTCGGTGTTGAAGGCTTCATTACTGGAATAATAGACATGCTGCCCCCAAAGTCATTCCTAGGCTCTCAGCGTCGGGAAGTCGTTGTGGCTATATGCTGCTTTACCTGTTTTACTATCGACCTTTCCATGGTAACGCAGGGAGGGATGTACGTATTTCAGCTGTTTGATTATTACTCGGCGAGTGGGATCACTCTGCTCTGGCAAGCCTTCTGGGAGTGTGTGGTGGTGGCCTGGGTGTATGGGGCTGACCGCTTTATGGACAACGTGGCCTGTATGATCGGCTATCGTCCTCTGCCGTATATGAAGTGGTGCTGGTCTTACGTGACTCCAGTAGTGTGTATGGGCGTTTTCTTCTTTCATGTGGTCAACTACAAGCGATTAGTGTATAATGCGGTGTACGTGTACCCGTGGTGGGGTGAGGTGCTGGGCTGGTTTCTCGCTCTCTCATCCATGCTTTGCATTCCTCTCACCGTCCTCTACAAACTGCTGCACTGCAAAGGCTCTCTCATGGAGCGCTGGCATCATCTGACCACACCTGTCTGGGGTCGACATCACCTCGAGTTCCTTCCACCGGAGAATGAAGCCAGACTTCTTCCAAAGgcagaagagaataaaaacacactgttaTATGAAAGTGTCATTTAATGTCCTGTCCAGTACTAGCAAATGATCAGCTACAGACAACACTGccctgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctcatgaACTCATGAAATCCAATCATTAGAGTCAAGTCCATACTACAAAGCAGTGAACCTATATGCCATTAATATATAGAGTGTCATCCCACATCAGACACACTAGAGTCCGTGCATATCAACCGTCATACGGTAATATACTGATCTTCTCTCAGTGTAATCATATTTCAGCAGAAGGCCTCAGAAGTGTTTGACCATTATCTGGCAGTGTGCTGATGTTGTTCAGtattatgtgtttgtgtctgttacGCTGCACTGAGATCTTACAGCAGTGCTGTGGAGCAGAGAGTGGGGTCattaataaaaactcatttcagagcaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229284 lncRNA upstream 46270 4249319 ~ 4305432 (+) True G154837
TU229253 lncRNA upstream 190082 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA upstream 190082 4136398 ~ 4161620 (+) True G154815
TU229188 lncRNA upstream 302705 4048746 ~ 4048997 (+) True G154759
TU229098 lncRNA upstream 463946 3887121 ~ 3887756 (+) True G154712
TU229422 lncRNA downstream 188605 4551033 ~ 4553168 (+) True G154934
TU229475 lncRNA downstream 409562 4771990 ~ 4816862 (+) True G154972
TU229478 lncRNA downstream 454937 4817365 ~ 4835482 (+) True LOC122328459
TU229494 lncRNA downstream 473565 4835993 ~ 4838432 (+) True G154989
TU229506 lncRNA downstream 501897 4864325 ~ 4915121 (+) True G154997
XM_043225129.1 mRNA upstream 1774 4338200 ~ 4349928 (+) True p4htma
XM_043224441.1 mRNA upstream 67470 4269846 ~ 4284232 (+) True rbm38
XM_043224439.1 mRNA upstream 84689 4255902 ~ 4267013 (+) True spo11
XM_043225375.1 mRNA upstream 179778 4155742 ~ 4171924 (+) True syt2a
XM_043224719.1 mRNA upstream 241127 4094381 ~ 4110575 (+) False LOC122328782
XM_043225283.1 mRNA downstream 169504 4531932 ~ 4539195 (+) True LOC122329078
XM_043224057.1 mRNA downstream 218115 4580543 ~ 4633899 (+) True samd10b
XM_043225117.1 mRNA downstream 279498 4641926 ~ 4686806 (+) False znf512b
XM_043225116.1 mRNA downstream 279683 4642111 ~ 4686806 (+) True znf512b
XM_043224336.1 mRNA downstream 326465 4688893 ~ 4710337 (+) False uckl1b
TU229052 other upstream 655064 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 655064 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1342092 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1342224 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1394977 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2230178 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2863566 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 2936851 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 3969313 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4125658 8488086 ~ 8488641 (+) True G155799

Expression Profile