RNA id: XM_043224439.1


Basic Information

Item Value
RNA id XM_043224439.1
length 2801
RNA type mRNA
GC content 0.45
exon number 14
gene id spo11
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4255902 ~ 4267013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGCTCGCGCCTGAAACGAGCATCTTTAGTCATCATCATCTTTAAGTAgattattttaactaaatactTTTACCAAAGCCTCGTTTCGCGTATTCGGTTGTGCCACCTTCGATTACTCTCTCCGTTTCGACTACAGTTGTAACGTCAATCCCTAATTCAGATGGCTGATTCGTTCACTGAGGTGGATAAGTTAAGAGACGGCCTGCGCGAGCGCCTCGAAACGGCCGACAAACGCCAGGAGGACATCAGCAGACAGGATGTTTTGACGCGCATTGAGAGAGTCATTCAGACGATAGTCACCAGCGTCTCTGAAGGAGAAGCACCTGTGCTGAGATTGATTAATAGAGGAAACTGGGACAATGTcagATTTCTTAAGTCTGTAGGTTTGGTACGGAAAGCAGACGTCCCAGAGACGGCCCTCCGATGTGACTGCCCTTTATCAGCCGCCAGATTTGCCCTGATTTTGAAGCTCTTGTCTATTATTTACAAACTTGTGCAAAGTGACTCCTATGCTACTAAAAGGGACATATACTATAACGATCCACAGCTGTTCGGGTCCCAGAGGACCTTGGACTCCGTCCTGGATGACGTTTCATGCATGCTCGAGGTTCCTCGCAGGAGTCTGCATGTGTTTGCCACATCCAAAGGCTTAATGTCAGGTGATCTGTGTTACTTGGAGGAAGATGGCACAAAAGTGGACTGCAATTCCAGCTCCACCGCGGTTCCGGTGTCTTCCAATGTTAATGGGATCAGAAACATTGTATCAGCTGCAAAATTCATTCTGATAGTGGAGAAGGATGCAACTTTCCAGAGACTGCTGGACGATGACCTTTGCACCAGACTTTCTCCCTGCATCATCATAACTGGCAAAGGGGTGCCTGATGTTAACAGCAGACTGATGGTGAAGAAACTGTGGGACACGCTACACGTCCCCGTCTTTGCTCTGGTGGATGCAGATCCTCACGGCATCGAGATCATGTGCATCTACAAGTACGGCTCACGGGCAATGGCCTTCGAGGCCCACAGTCTGACTGTCCCCAGTGTGCTGTGGTTGGGCCTCCTGCCTTCAGACATCCAGAGGTACAGAGTCCCAGAGGAAACGCTTATTCCATTTTCTCAAGCAGACGAGAGGAAAATTCACAGCTTGAGGAGCAGAGAGTACATCGCCTGCCAACCCGCCTGGGAGAGAGAGATAGAAACCATGCAGAGGCTGAAGCAGAAAGCTGAGATACAGTGCCTGGCTTCCATCGCCCCACATTTCCTCACTCGAGTCTACCTGCCGAATAAACTGCGCTACGGAGGCTGGAGATGAGCGTGTGCTGCCCTCTGCTGATGTGACCTTAGATGAGACGGAGACTGAGCTAGGAACTCAGATGTGCCTCTGCTCTGGGATGGCACACGTTTGCTTGGGCTGTGAATATAATGCAGCGGAACAATAACCTACATAAATAAACTCATGCCTTTcgcattaaatgtttaattcggttttttaagtaataataaacctTCCTAAATGATATTAGTGCAGTTAGTGTTTATTATGGAGGCGTTGGCTTCacgcttattttttggtttataaatgtgtgtttattttgttagttaattatttatttttggaggTAAATGCATGGATGGTTCTTCAGGTGTTTGACATAATGTCGAGACTCTCGTTTAGCGCCAGGGGGCGGTGTGCACtcacttttcttttattcagaaGACATTGCACACTTTTGACCCTTCTTAGATTGTGAGGTTAAGGCAAATACTAATGACAGAGTCATATTTGTCCAGTATAAAGCTTCTGAgttcaggaaaaaggtggatatcaaaactttttttccattaatgcTTTATACTCTTTCgtccttttattaatattgaagCATGTTACTTGATTCATTTTAGGACGATGAGGTCTGGTGTCCTGATGACATTATCTGTCTGTCCTCGGTCGACTGCTGTCCCTGGGAGCTTCCTCACTGTGGTCCTGAGCCAATGAACTGATGAATAGAGAGCGCGACACTTGGCACAAACAAGCTACACAATCAAGCCTGCGACACTTAAAGctgattctgacggcacccattcactgcagaggatccactggcgaacaagtgatgtaatgctacatttctccaaatccgatgaagaaacaaactcatcttttGGATGGcctgggggtgagtaaatgtttttgcaaatgttaaTTTCCAACAAAGCACATTTGACCTGAATGTGGCTCATTaagatacattttctttttcaaaaaggtctaaaaacaataattttgatAACATGCTGGAATGATTGAGACTGATGAACGCTGTGCATGTTATCAGGGTTGAAGCTAAATCTTCTGTGATAAAAAAGCCAAGGTATTGGAGCTAAACAGTACAGGTTTCACAGATACTATCTAAACTCTTCCaataattattatgcaaatcTAATTGCAAATTTCAGTCTGCATGCCAGAACACAAGTAACAAATTAGCCAGGCCTCACGTGATTATTTTCAAGTGCTAAACAATCTCAACAATACTCTACGACcgatggaaaataaaataaggagATCTTCTGAGTTGGGGGTTATTGTCGTTGGATGGAGACATTTGTCCGCAGACAAAGGGTCTTTCAGGCCCTTTCAGGTTTGAGAGGTGTGAACACCTGCAGCTCACAGTCTTTGAGGCTGGAGAGGGTGTGAGGTGTCCATCGGTGCTCAACACCAAAGCCTTAATACTTAGCAAAGACATGCCAATAAAGTCACTCCTGCGTCTCGCCCTGCTCAGTTATTCCCAGCAAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10878 SPO11; meiotic recombination protein SPO11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229253 lncRNA upstream 94282 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA upstream 94282 4136398 ~ 4161620 (+) True G154815
TU229188 lncRNA upstream 206905 4048746 ~ 4048997 (+) True G154759
TU229098 lncRNA upstream 368146 3887121 ~ 3887756 (+) True G154712
TU229078 lncRNA upstream 452138 3800350 ~ 3803764 (+) True G154699
TU229422 lncRNA downstream 284020 4551033 ~ 4553168 (+) True G154934
TU229475 lncRNA downstream 504977 4771990 ~ 4816862 (+) True G154972
TU229478 lncRNA downstream 550352 4817365 ~ 4835482 (+) True LOC122328459
TU229494 lncRNA downstream 568980 4835993 ~ 4838432 (+) True G154989
TU229506 lncRNA downstream 597312 4864325 ~ 4915121 (+) True G154997
XM_043225375.1 mRNA upstream 83978 4155742 ~ 4171924 (+) True syt2a
XM_043224718.1 mRNA upstream 145327 4094381 ~ 4110575 (+) True LOC122328782
XM_043224719.1 mRNA upstream 145327 4094381 ~ 4110575 (+) False LOC122328782
XM_043224724.1 mRNA upstream 164601 4070798 ~ 4091301 (+) False mybpha
XM_043224441.1 mRNA downstream 2833 4269846 ~ 4284232 (+) True rbm38
XM_043225129.1 mRNA downstream 71187 4338200 ~ 4349928 (+) True p4htma
XM_043225128.1 mRNA downstream 84686 4351699 ~ 4362428 (+) False si:ch211-117c9.5
XM_043225127.1 mRNA downstream 84689 4351702 ~ 4362428 (+) True si:ch211-117c9.5
XM_043225283.1 mRNA downstream 264919 4531932 ~ 4539195 (+) True LOC122329078
TU229052 other upstream 559264 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 559264 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1246292 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1246424 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1299177 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2325593 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 2958981 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3032266 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4064728 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4221073 8488086 ~ 8488641 (+) True G155799

Expression Profile