RNA id: XM_043224718.1


Basic Information

Item Value
RNA id XM_043224718.1
length 3386
RNA type mRNA
GC content 0.41
exon number 18
gene id LOC122328782
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4094381 ~ 4110575 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGGAGGAACAAAGATGACATCAAACTCATTCATCAACATTTTTTGAAGCGATGCACTGAAGCTCACCCACAACAATTCAAACAGAAaccagaacaaaaaacaaaactcgaCAAGTCTGTCTTCGCTGACTGCTCTGTTTTGACTGCAGCTGCAAATGGAAAGGTTCAAAATCTTGCTTTTGACAGTGGCAGTGTTGGCGCAAGCAATGTCTCAAAACAGCACTACTGAATCTCCAGTTCAGATTTCCAAGCCCAAGATAACTGTGAATCCAGATCATGGGGTGCTGTACAATACTGAGAGCGTCACTCTGAGCTGTGAGATCTCTGAAGGACCCCCGGGGTTACAGTATGACTGGTACAAGGACTCAAAAGATCTTGGTCAACATCAGCGCAGCATCACTGTGAACGAGAACGGAAAATATGAATGCAaaggaaaaagaagagagaCTCGGTCTGAAAAAAGTGATGTTTACACTTTAACTCTGAAAGATCCTCCTAAAGCGCAGCTCACGGTGAATCCTGAATGGACAGAATATTTTGTGACTGAAAAAATCAATCTGCGGTGTAAGATTGAAGACGGTTCTTCGGGCTGGATCTTCGAGTGGATAAAAGATAGCTGGACTTCAGAAAAAGACGACGTCCAAACATTGAATGTAAAACACTCTGATTCTGGAGAATATTCTTGTAGAGGAAAACTCAGTAACAGACAAGTAACTACTCAACAAAGTAATACATTTCAACTGAAAGTCAAAGaaatgccTCAATCACAAGTTCAGTCTGACTGGACAGAAGCGTTTCCTGGTGAAAAAGTCACTTTGAAGTGTAAGATGCAAGATGCACTCAAAAATTGTAACTATATGTGGTTCAAGGGCCAAACCAAGATTGTCTCCAGCGgtgaaacaaatataaaaggAAACAGTCTCACACTCTCAGTTCAGTCCAGTCATGACGGGGAGTATGTGTGTCAAGCTGAGCTGCACCACAGAAAGGTGACGACTGAAAAAAGTGCACCGCATTCGTTAAAAGTTCATGGATCAAAACCAACACTCCATCTGCAGCAAGATCCATCATACTCTGAGATCTACACAGGAGAACAAGTCAAACTCACTTGTAACATTCAAGAGCAGACGTCACAATGGGAATATCAATGGAAAAAAGATTCTACACAAGAAAATAGTCACATTTACATCATCCCCAGTGCTGAACTCTCTCATGATGGGTCATACACTTGTCAAGTAGGAAGGAGGGGGACCACATTTTCACAGTCTATAAAACTGACCATAAGAGAACCGCCTCAGCCAAACTTGTCAGTAGCGCCTCTGTGGAAACCATTTTACCCAACTGAAAAAGTAACCCTGAAGTGTTCAATCGGTAAAGATTCAAATGAATGGGGCTTTGAATGGTTTAGAAATGAAGCTCTGCTTAGAAGGGATAAGGACACCTCTGAAGACACACTCTCAGCTAAAGCAAAACATTCAGGAGAATACACCTGCAGAGGAAAACATAAGACGAGAACACCAGTGACTACAGGACGAGCAAAAGCTTTGCCACTtcaaatttacaATAAAACACCAAGACCAAGCATCAATAAGCATCAGTGGTTTGAACCCTTCTATACTAATGAGCGAGTCCAGCTTCATTGTCACATGTCCGGTAATAGCTGGGAATACCAGTGGTATAAAAACTTAAGTGCTCTAAACACGAATGAAGAATTGACCCTTGACTCGCTATCTGTCACTGACACTGGAGACTATCACTGCAAAGCAAAGAGAGGAGACTTTTCTGTGGACAGTATGACTCTACGAGTGCAAGTCCAAAAACTGCCTGAACTACAAATCCAGTCTGAATGGACAGAAGCATTTCCTGGTGAACAAGTGTCTTTGCATTGTGTGAATGAACATGTTTCTAACAACTGGACTTATATGTGGTTCAGGGGCTCAGACAAGATTGTCTCCGGTGCTGAATCAAACATGAAAGGAGACAGTCTCACACTCTCAGTTCAGTCCAGTCATAACGGGGAGTATGTGTGTCAAGCTGAGCTGCACCACAGAAAGGTGACGACTGAAAAAAGTGCACCGCATTCGTTAAAAGTTTATGgATCAAAACCAACACTCAATCTGCAGCAAGATCCATCATACTCTGAGATCTACACAGGAGAACAAGTCAAACTCACTTGTAACATTCAAGAGCAGACGTCACAATGGGAATATCAATGGAAAAAAGATTCTACTCAAGAAAATAGTCACATTTACATCATCCCCAGTGCTGAACTCTCTCATGATGGGTCATACACTTGTCAAGTAGGAAGGAGGGGGACCACATTTTCACAGTCTATAAAACTGACCATAAGAGCTCGTCCGCCTGCACTCCTGAGTCTGGAGACTGAACTGGGTGACATTATGACTGGGTATATGACTCTGAGGTGTAACGTCTCAGACGGCAGAAACTGGAACTACACCTGGTTCATGGACGGACAGCAGCTCAACGCATCCTCAGATGTACTCAGAGTGACAGGAAATGAAGAAAACATCAGAAGGGAATTCAAGTGCAAGGGAATTAACACAGTGAGACCGCTGTACTCCGCTCTGAGTGACGGCTTCATAGCCAATAATATTAtattcaAGAGAAAAATCCTGCTGGCCATCTCAGGGTGTCTCGTCTGTTGTATTGTCATCCTGATCATTGGATGCATCATTCTAAAAGTTACCCGTAAACCAGAGGTAAAAGAAACAGCACAAGAGGACTTGTTCTTCTCAATGACAGACTTCAAGAACCAAACTGCTTCCCCCATGAAGGAGTACATGGACAACAGACCATCAGAGCTGGAGGATTGTGAGGAAAAAGAGGAACTGATCACTGGTCGAGCTTCAGCCGCTCACGAGGATGCTGTGATTAAAGatgaagACACACCAGCTTCAGAAACCAATGGCATGACATCATTTAAAGGACTCTGAACTGTTTTTTCAGCAATCCCCATCATGAGTTTCTGTATTCTCTGAGACACAGATAAACGGTATGTGCTTGTTTCAAAACTGCATTAGCATGGCACTTCGTCTAGTAGCTCTTTCAAAAGCTAAAAACCAGCTTGttacgttttttctttttcaaattgtCGAACCGAACTGCAGTAAATAAAGAGAGTAAATCAggagaataaaatatttctgtattttattatataatgaaatatttatatatcatattattaaaCATCTCTGTAGCCTATATATCTGTACATACACGAATCTGTTCATATTGTAAACATTGTAACACGCCaccactgaaaacaaaaactgtaatccagtggattattttgttattgtgagttatgtgcatattaaaattattattttttggttattgctcattttacatttaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229188 lncRNA upstream 45384 4048746 ~ 4048997 (+) True G154759
TU229098 lncRNA upstream 206625 3887121 ~ 3887756 (+) True G154712
TU229078 lncRNA upstream 290617 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 295097 3797474 ~ 3799284 (+) True G154698
TU229253 lncRNA downstream 807 4111382 ~ 4161620 (+) False G154815
TU229249 lncRNA downstream 25823 4136398 ~ 4161620 (+) True G154815
TU229284 lncRNA downstream 138744 4249319 ~ 4305432 (+) True G154837
TU229422 lncRNA downstream 440458 4551033 ~ 4553168 (+) True G154934
TU229475 lncRNA downstream 661415 4771990 ~ 4816862 (+) True G154972
XM_043224727.1 mRNA upstream 3080 4070796 ~ 4091301 (+) False mybpha
XM_043224721.1 mRNA upstream 3080 4070797 ~ 4091301 (+) False mybpha
XM_043224723.1 mRNA upstream 3080 4070798 ~ 4091301 (+) False mybpha
XM_043224724.1 mRNA upstream 3080 4070798 ~ 4091301 (+) False mybpha
XM_043224726.1 mRNA upstream 3080 4070799 ~ 4091301 (+) False mybpha
XM_043225375.1 mRNA downstream 45167 4155742 ~ 4171924 (+) True syt2a
XM_043224439.1 mRNA downstream 145327 4255902 ~ 4267013 (+) True spo11
XM_043224441.1 mRNA downstream 159271 4269846 ~ 4284232 (+) True rbm38
XM_043225129.1 mRNA downstream 227625 4338200 ~ 4349928 (+) True p4htma
XM_043225128.1 mRNA downstream 241124 4351699 ~ 4362428 (+) False si:ch211-117c9.5
TU229052 other upstream 397743 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 397743 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1084771 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1084903 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1137656 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2482031 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3115419 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3188704 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4221166 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4377511 8488086 ~ 8488641 (+) True G155799

Expression Profile