RNA id: XM_043225375.1


Basic Information

Item Value
RNA id XM_043225375.1
length 6038
RNA type mRNA
GC content 0.43
exon number 7
gene id syt2a
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4155742 ~ 4171924 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgCCCTCTGTTCCTCCGTCTTTTCTCTCGCTCTTCAGTGCCTCCATGGGCCATCATCGCCATCGCGATCGTAGCCGTGGTCCTCATTCTCACGTGCTGCTTCTGCATCGTTAAAAAGACCTGCcttaagaagaaaaaaggcaAGAAGGGAAAGAAAGGCAAGGGAGACATGGGAATGAAGAACATGAAGGGAGAGAAACAGGAAGAGGATGACGATGAAGAAGATGTAGACATGGCAATAActgaagagaaagaggaggaaccGAAAGAGAAGGAGAAGCTTGGCAAACTTCAGTTCTCCCTAGACTACGACTTCTCTGACAACAAGCTGACAGTGGGCATCCTGCAAGCCGCGGACCTGCTCTCCATGGACAGCGGCGGCACCTCAGACCCGTACGTCAAAGTGTTCATTCTCCCagacaagaagaagaagtttGACACCAAGGTTCACAAGAAAACCCTCAACCCCGTCTTCAACGAGACGTTTCACTTCAAGATTCCGTTCACTGAAATGGGAGGAAAGACTCTGGTCATGTCTGTGTACGACTTCGACCGTTTCTCCAAGCACGATGTGATCGGTGAGGTGAAGATACCCATGAACACCCTGGACCTGGCACAACCCATCGAGCAGTGGAGAGACCTGGACAGCGCAGAGAAAGAGGAGCCTGAAAAGCTCGGAGATATCTGCATCTCTCTGCGCTATGTACCTACAGCTGGAAAACTCACCATCTGCATCCTCGAGGCTAAGAACCTGAAAAAGATGGATGTTGGAGGActctcagATCCCTACGTGAAGATTCACCTCCTGCAAAACGGCAAGcggctgaagaagaagaaaacgacCGTGAAGAAGAACACACTGAACCCGTACTACAACGAGTCCTTCAGCTTCGAGATCCCACAGGACCAGATGCAGaAAATACAAGCTGTGATCACGGTGCTCGACTACGATAAGATCGGCAAGAACGACGCCATCGGGAAGATCTGGGTGGGCAGCAAAGCGCAGGGCACCGAGCTCCGGCACTGGTCCGACATGCTGGCGAACCCACGCAGGCCCATCGCTCAGTGGCATCCTCTCAAACCCGAGGAGGAGGTGGATGCCACGTTAGCAGCCCTCACTGCCAAGAAGTAATCCTGCTCTTCTtccttccctccctctctctctctctcctttcccTCCCCCTTTCATTTCCTTCACTTTTCGACATGCACAACACGTCATCTTACCCAATCAGCACTGAATTACAGCCATGGGCCGCCAGACTAGAGGTATTAAAGAAGACCAGCTCCAACGAGAAAGCGTCTAATGAGAGAGACTCTTCCCGCAGATGTTCAGGCCGAGCTCGTAGGGGTGTATATCCTTGGGGTCCGTTCACAGAAGAGATGTAAGCTCACATTCACGActaaaaatatcataaacagCATTCCAAAGTTTTCCATCGGGGACCAGGGATAAAAAAACACTGCCTCTTCCACTGCCTAATTTAACACATTCCTTCTAGATTCTCTGGTCATCTAGATGAAATCAGTTCTGTTGCTTTTGTCGAGTCTGAAAGGACAGTGAAGAATTGTTTGTCattgtgaataattaaataagttaatCAAAAAAAGTGGGAACGGGAGAGATAGTTGGACTAGATGCTCCTGCCCAGACAGAAGGAATCTTTCAGGTGTCGAATACACTGCCTGCAAAACAACCTCTTCTTCCATTCTTCAGTTCCAGCCGGTCGGCTGGCTTCTTCCACTGCCCGACATCCTAACAAACCCTGACAAAAAGGAGACAAGCCTTGAAACATCGTGAAATAAGCAATTCGTAGCTGCCAGGGACGTCTTCCTGTTAGCATCGGCGTATTTGTTTCTTTGCTTTGATTTCTTGTGGTAAAACGTATTCTGCCTGAGCACTTTAAATGAAGGTGTGTTTTTGTTCCAGTCAATGCTTCGTTACTGTTACCTGCAGTTTTTGATGTTCTGAATCCtctccttaaaggaatagttcgcgaaaaaacaaaaatgaagtcatcatttgctcacttTTCTTTCTTACGGCGGCGGAAAACAAAAGGAGGAGTTCAAAAGAATGTTCATGCCGCTCTCTTCCAGCCCCGGCTAATTCGTGCGACCTTTTGCCAAATCGTTTATATTTGATGAGTTGGGTTGCGAGTACGAATCGCTCGCACCTAGCCCCGCCCCTAAATCTAGacaaatcgtaaaaaaaaaaaaaaatcatacaagtGGGGTCGTACGAATTTGTACGAtttagccacctcataaaatacgtACGACTTGGTCATGTGTCGTCTCTTCCATACTATGGAGGTGAATGCTGACTAAgcttaaaaaatacagtattttccaAAAATCTCAGGAGAGAGCAGTGTGAACATTCTTCGAAATTTCTCCTTTTGTCTTCTACGGAAGAAAGAGGGAATTTCATACGGGTTTCGAAAAACATGAGCGAACTATTCCTTCGCTTTCGGTTTTCATGTTATTGTTTCACGAGAAGAGCTGATTGAAGGCACTGTTACGTGTGTATTTAACTGCACATCTTACCAAACTGCTGAACTTATTTGCACTACTGGAACTGCATCCTGTACATATTGCTCTGTCGATCTCGGTACACGCTTTTGTGACGGCGCATTCTTGAGACGACTTGTCAGAGTtcgcatttgtttaaaaagggAGCCTGTGTCATTTGAAAGCTGCTTTAGGGCTTACCGTACGAGTCATTGTGTGAGGATGTGAGTCTCAGAATATCGTTTCGCTTAAGACCGACGCAGAGCTAAATCTTTGCGCGTTTTATCCTCATATTTCCCGGAGAAACTCTTTTGGCAAAGATGATACCTACTGATATGCGTTCGGTTATGAAGTAGTTGGGAAATGAAGCGAAATTGCAAGCCTGAGTTGGATCAAGATTGTTGGAGCGTTATTTATTGAGTAGAGACTTTTCATCCAGGCCAAAAACGACATGTAGAGAGCCAAGAATGGATCTGAGGGAGACTTTGTTGTGTACATGCCGTAACCCAATAAAAACAAGTCGTTCTCGTGAGGAAACGTCACTTTAGCGGCTTTCATCTCATCACTGGAGCGTTACTCTACTCCCACACCGAGTCGGCATTAATGAAACGTCtgtcattgtaaaaaaattcgAAAACTGCACAATAAAAGCGCATCAGCTCATGCTTTATATTCAAAGTCTGCAAATCGCATTATAGACCGTTTTTGGCTTCATCCGTTGAGTTAAAGTCATTAGGTTCCAAAACAAGATCGGACCCCTTTGCCTTTTATTacatgagggaaaaaaaattctaaatgtcttttttttgacaTACAAGTACATAACGTAATTTTCCATTTTGAATATTGCCGTTTTGCGCCACTCGAACGAACGAATGAAAAAAGCCGCTTCAGTGAGGTTTGCCGAACGAGGTTCCCACCGGATAAATGGAAGCTGCTCTTCTGACGGGCCGCGTTCAGTTGCAATAACTCTGTGGTTGGATTGAGAAACAGCGGGTACTTCCATCTACATTCACAGTGCAAGGTCAAACGAATGTGTGCTTAGCGCTTATCAGTCGTTTACGTGACATCATGCTTTCTTTCCCCTCTAGTATCCGATcgaaaccttttcttttttttttctttctttgccgTTACCGTCATTTGTTCCGGTGCGATCTCTTACACGGATACGTCTCTTATTTCAAAGGACTTTCacgaaaggaaaaaaaaaccaaaaaacgcAAGCAACACCCCCCTTCCCGAACCCATAGGCGTGTAGTTTGACCTATATATGCATAGTTCCTACTTTATGATACTGCATGTTACAGTACAAAAAGATGCGCATGTTTCAGAgatgaagcaaaaaaatatattgtgtacCTAAGTAGGTgttctttgtcattttaataacaaaacggAGGGGGTtaaatactgtgtatattttctaatcaaatcaaatatgtatttattttctgtgagTGGGTACTGGAGAGAATATGAAGTATACTAGACTAATCTTCATTTTCAGATTCAATCCATGCCTGGACATCATGAGCAAATACTGTATGTTAAGTGCTTCGTGTGAACTAATATAGAATGAAAACGTAGCCGCATGCTTGCCGTCTACTAATATTGTTAAGGAAcaaaatgatgtatttatttatttatttaaaatcagttatttctatttatttttcagagtaACGTTTGTATGCGTCTTTGTCAGAATCCGTTCGCAGGAAGTCAAAACTTCCCGCGGGGGGCTCCAAGTGGATATCCCCCCCCTCCTCCCATCTTGTAGGATCCTGTAATCAGCAGAGTATCTCTGTTGGAACTACGATGTAAAGTTTCAgaatcattatatttaaaagaattacactttattatctttttgggtattttttcttcatctttttcGCTGTCAGTGCCAACGAGAGAAGTCACGTTTACTGCCATTTTAGCTGACTTTACGTCATTCTTACGTGATTTTTTCGGACCAACCGATTTCTACCTTGGCAACAAAGTTGCCGGAGCACAATACTATCAATCGCGTTAGAAAACTTGGAGTCCCcactgttttctaaaaaaaaaaagcttttatttaagaATCTTTTACATGAGAACAGCGTTTAACTAGCCAATAAATCGTAAgtttgtgtgtgcgagtgtgaaTAAGATAAAGCCATAAGACTTGAGCTAAATCTTTGGAGCTCAGCTATATAGATGTACTTAAGATGATCCCAAAACGTCTCCTTCCTTTCGTAGGCTGATCAATCTCCTCCACATTCCACACAGTCTGTGAAGCTACGGGGCCACACTGTTTCCTAAGATGTGCTAAGTTTAGCATTATTGGCAGTTCAACCTGAAATAGTCAGTCTTTCGGTTAACAATGTGTCGTCTTGAGGGGTTTTCTTTGAGTTTACGATGATTTCGGTGTATGTTGGGTTTTATAATGCCTTGATTTTACACAAAGTGTGCTAGGGACGTCTGGATGAACTTCTACTGTACATGTGGTCTTAGTTGTTGCCATTCCACTATGTACGTACACGCATGCATTTTTGGGCAAAGGGCAATTCAAACcgttcatttttattaacagttcACAAGCCAGAGTTCAGTACGGGACAGAAGATCATTCGGAGCAGGAATTCGGCTTATCCGAGCAATCAGCATGGCGTGAGGTTTGAGTGCGAATGCGTgcgattttaataataatgcataggCCCTTTAATAAGGAATAATCATTTGTCGTGAGTTACTCGAGCACTGCCATTCTGCCTCTACGGCAGCGTGcacaatgaacatttatttgaaacattccTGATCGTAAACCACGGAGTCGTTACTTGCAAGCGAAGACATTTGAGAGCAGTCCGAAAACTGCTGATGGAGTCCGTCTCTAAGTTGCTCTCCATGTATAAAACCAGCTCGGTTATCTTCGTAACTCTCTGTGACTGTTTTGTGTCATACAAGTCAACGAGAAACCGCTCTAAAGCCCGTAACGGAGATGTTCtctttagtttagtttctttCCGAATGCTAGCTGATGCCTTTATGTCTGCTTGGGCGTGATCACGTAGCAAAGTTCTGGGGATAAAAGAATCAAAAGCCTGCCATTGtgtctttttgatttgattcttcTCTTGCACTTTTCATTCTGCTTATCTAGAGTTGTAAAACGctcttttttctatttgtatctATTTGTGATGGGTTTCTTTTCTTTAGTCGGTGGGAGACTGTGAGGGCTCGTCCCTCAGGCTATGTTTGTACCTGTTTCGGTGTTctcgtgtgtgtgcgtgtgttcatGTCCGTATTGTCGTGCCTAGTGTGGATCAATCGCATGCTTTAGCCCTTGATGGGACACTTTGAGAAAACGTTGCTCACAGACTCTTCCCACAACCCCCTAGTGGACAGTACATGAGCATCAGCAATCCTTGTAAAGACGTCAAGGGAACCAAATAGCTCTACAGATTTACCATGTGTGTTACCAGCTCTGTActgaaacaaatgagaaaataaaggCCTTTTAATTACACTTAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19902 SYT2; synaptotagmin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229188 lncRNA upstream 106745 4048746 ~ 4048997 (+) True G154759
TU229098 lncRNA upstream 267986 3887121 ~ 3887756 (+) True G154712
TU229078 lncRNA upstream 351978 3800350 ~ 3803764 (+) True G154699
TU229073 lncRNA upstream 356458 3797474 ~ 3799284 (+) True G154698
TU229284 lncRNA downstream 77395 4249319 ~ 4305432 (+) True G154837
TU229422 lncRNA downstream 379109 4551033 ~ 4553168 (+) True G154934
TU229475 lncRNA downstream 600066 4771990 ~ 4816862 (+) True G154972
TU229478 lncRNA downstream 645441 4817365 ~ 4835482 (+) True LOC122328459
TU229494 lncRNA downstream 664069 4835993 ~ 4838432 (+) True G154989
XM_043224718.1 mRNA upstream 45167 4094381 ~ 4110575 (+) True LOC122328782
XM_043224719.1 mRNA upstream 45167 4094381 ~ 4110575 (+) False LOC122328782
XM_043224723.1 mRNA upstream 64441 4070798 ~ 4091301 (+) False mybpha
XM_043224724.1 mRNA upstream 64441 4070798 ~ 4091301 (+) False mybpha
XM_043224726.1 mRNA upstream 64441 4070799 ~ 4091301 (+) False mybpha
XM_043224439.1 mRNA downstream 83978 4255902 ~ 4267013 (+) True spo11
XM_043224441.1 mRNA downstream 97922 4269846 ~ 4284232 (+) True rbm38
XM_043225129.1 mRNA downstream 166276 4338200 ~ 4349928 (+) True p4htma
XM_043225128.1 mRNA downstream 179775 4351699 ~ 4362428 (+) False si:ch211-117c9.5
XM_043225127.1 mRNA downstream 179778 4351702 ~ 4362428 (+) True si:ch211-117c9.5
TU229052 other upstream 459104 3694652 ~ 3696638 (+) False ube2t
TU229053 other upstream 459104 3694652 ~ 3696638 (+) False ube2t
XR_006247841.1 other upstream 1146132 2995169 ~ 3009610 (+) False rbm10
XR_006247840.1 other upstream 1146264 2995169 ~ 3009478 (+) False rbm10
TU228663 other upstream 1199017 2955085 ~ 2956725 (+) False G154424
TU230095 other downstream 2420682 6592606 ~ 6594735 (+) False si:ch211-220i18.4
TU230359 other downstream 3054070 7225994 ~ 7238919 (+) True G155561
TU230347 other downstream 3127355 7299279 ~ 7304358 (+) False tcea2
TU230667 other downstream 4159817 8331741 ~ 8333376 (+) False LOC122328506
TU230751 other downstream 4316162 8488086 ~ 8488641 (+) True G155799

Expression Profile