RNA id: TCONS_00010004


Basic Information

Item Value
RNA id TCONS_00010004
length 3402
RNA type mRNA
GC content 0.41
exon number 23
gene id XLOC_005183
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 9096963 ~ 9132682 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCGTGTCCTGCCTTCACAGCTCATATACTTTGCTGGCTTTGTCTTTGTGGATGTGTGGCAGAAAGTATCCGTACATTACCTCATGTTGAGCGTTTTGATGTGGTGAGACCTAAAAGACTGAACCTCAGTAAGGTACAGTCTGATAAAAATCCACCAAGCCATGAGAAGTATCCTGACAGACTCGCATATAAATTATTCTTTGAAGGAGAAAATCATGTGATTCACTTGGAAAAGAACAAGCAACTCGTTGGACATAATTACACTGAAATATACTATCAAGATGACGGATCAATTGTGAGCAGAAATCCAAGTTTTAAGgaCAATTGCTACTACCATGGGCACATTCAAGATATGGAATATTCCTCAGTCAGCGTGGGAATCTGTTCTGGGATCAgAGGTTTTGTCAGAGTGAAACAACAAGTCTATCTGATTGAGCCCCTAGCTAACCACAGTGATGGAGATCATGCACTTTATAAACACCAGCATCTGAGGAGAAGGAGAAGCTCTGCTGGTGAACCGAAAACCATGTTTTATGACCACGAACCACAAGTGAGCGCTGCCTTAAAGTCGAGCAGATGGAATATGAAGAGTTTTCAAACTCCAAGATTTGTGGAATTATTTCTGGTGGTCGATAACACTGAGTACAGAAACTTTGGCTCTAGCATGGATTCTATCAGAGCCAGGATGCTGGAGGTGGTAAATCACGTTGACAAGTTGTATCGATCTCTTAATATCCGAGTGATGTTGGTGGGTCTTGAGGTCTGGATGAAACAGGACCAGATTGTGGTCAGTGTGAGTTCTGATGACACTCTCAGTCGCTTTATAGAATGGAGGAAGAGCAATCTGCTTAAAAGGGTCAAACATGACAACGCTCAGTTTGTGACtGGAATTGATTTTTTGGGTGACACAGTTGGGTTGGCAAACAAATTTGCAATGTGTGCCGAAAGCTCAGCAGGAGTCAATCAGGATCATAATCAGAACCCACTGGGCCTGGCATCCACAATTGCACATGAGATGGGTCATAACATGGGCATGTCCCATGATGAGGATCACTGCACGTGTGGCTCGTCAGTGATCAGTTCCTTCTGTATCATGACAGAGCGTGTGGGCACGCTGTTCCCAGAGCAGTTCAGTGACTGCAGTCTAGAGCAGCTGACTGTATTTCTAGACAACGCCAACCCTAGCTGTCTGCTGGACACCCCCAGCTCATACAAACTGTACAGTGGGCCTGTCTGTGGTAATGCTTTCCTGGACCCTGGAGAGGAGTGTGACTGTGGATCAGTGGAGGAATGTAAAAATCCATGCTGTGATCCCATGACCTGCAAGCTCACTGAAGGTTCACGCTGTGCTCAGGGAGACTGCTGTGAGAATTGCCAgATAAAAGATGCTGAAAGCTTGTGTCGAGCATCTATAAATGAGTGTGATGTTCCGGAGTACTGCACAGGGCTTTCGGAGAAGTGCCCTGAGAATGACTTCAGGATGAATGGCATACCTTGCAGCTCTGGCCAGGGTTACTGCTACAATGGCCAATGCCCCACTCATCTCCAGCACTGCCAAAGGCTTTGGGGAACAGGTGCCAAAGTGGCTCCTGACACATGCTTTTACCAGAACACATTAGGAAAAAATGATTCTCACTGTGGAAAAACCAAAGATGGCATCAGACCCTGTGCAAGAGAAAACATGTTTTGTGGAAAGATCTTTTGCAATGAAGGAAATGAATTCCCCGTTACTGGTCAGAAAGCGGTCATAGTAACATTAAGAGGACAGTGCAACGTAGCAGGGGACCAAACAGAGGAGGACGCGCTCAGCATGGTTCCAACTGGCACAAAATGTGGGCATAATAAGGTTTGCTATGATTATAAGTGCCAAGAATTGAACATTTATGGTAGCATTGAAGGCTGTTCACTGCAGTGCAATGGTCGAGGGATTTGtaatcataaaaaacaatgccaCTGTGATCCAGGCTGGGCACCACCTTACTGTAATGTCAAATATTCTGAATTGTCATCTGCAAAGACCATTGGCATCTCAGTAGCTGTTGCAGTCGCTGTGCTTGTGGTAATATGTGGAGCCGTGCTTtatcataaaaaaagaaaagccatcagCCGCCACAAGACGCAAACTCCAACTTCAGGGCAAACGAGTCTTCTTTTTGAGAACAACAGTGCCCAGAAGGACCGTCCTGAGATCAGTCAGCCTATATTCATGGGGACCACTGTATCTCAACCCTGCACCCCTCTAACTGCCAGAGTGGGTCCGACCCGTCCTGCTCCACTACCTCCAAAAAAGCCGCCATCACAACCCCAGCAGACCACAGTTACACAGGGAACGAAGTTGCCTGCACCTCCAGTTCCTCCAGTAAAACCATCTTTAGCAACAGGATCCTGGAGGAATGACCATGTGACAGAAGACACAGTGAAGGTTGTGTTGAAACCTCCCATCATGCCAAGAAGATGACCAGACCTGAAATCCCCCTGTGAGTCATTTCAGGAAATTAGAACCTTTCTCTGTCACTTTTATAGAGTGGGAGTGTCTGAATCACAAAGTGCTTTTTTTAAACCatgctttaaaaaacacacatacactgctgTGCTTGGCCTTAGCTGCGTGTTGTCTGTTAGTATatagttaaattaaaattattccccctcctgtgatttctttttttcttttttaaatatttctcaaagaatgtttaacagagcaaggatttttttttcatagtatttcctaaaatattttttcttctggagaaagtcttagttgttttatttcggctagaataaaagcagtttttaattttctttaaaaccattttaaggtcaatattattagcctctttatgctatatatttttcgattgtctacagggCAAATCACttttttacaatgacttgcctatttgaCCTAatctgcctagtaaacctaagtAGCCTAGTTAAgaatttaaattgcactttaagctgaatactagtatttagtaaaatattatatactgtcatcatgacaaagataaaataaatcagttattagaaatgagttattaaaactattatgttaagaaatgtgttgaaaaaaaatcttctctccattaaacagaaattggggaaaaaatatacagggggctaataattcaggatggctaataattctgattttaactaagtcaaaattattagcattattagctccccttttgattttttttctttgtttttaaatatttcctaaatgatgtttaacagagcaaggaaatgttcacagtatgtctaataatattttttcttctggagaaattcttatttgttttattttggcttgaataaaagaagtttttaattttgtaaaaactattttaaggtcaaaattattagcccctttaagctatattttttcctc

Function

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0006954 inflammatory response biological_process
GO:0006508 proteolysis biological_process
GO:0051044 positive regulation of membrane protein ectodomain proteolysis biological_process
GO:0002693 positive regulation of cellular extravasation biological_process
GO:0071065 alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070808-1 Predicted to enable cell adhesion molecule binding activity and metallopeptidase activity. Predicted to be involved in several processes, including inflammatory response; positive regulation of cellular extravasation; and positive regulation of membrane protein ectodomain proteolysis. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in ovarian follicle. Orthologous to human ADAM8 (ADAM metallopeptidase domain 8).

Ensembl:

ensembl_id ENSDART00000066471

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010000 lncRNA downstream 9397 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA downstream 12395 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009995 lncRNA downstream 501599 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00011100 lncRNA downstream 521938 8573933 ~ 8575025 (-) True XLOC_005178
TCONS_00011099 lncRNA downstream 616255 8477459 ~ 8480708 (-) True XLOC_005175
TCONS_00011101 lncRNA upstream 94704 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00011102 lncRNA upstream 94704 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00010026 lncRNA upstream 927954 10060636 ~ 10063668 (-) True XLOC_005199
TCONS_00011103 lncRNA upstream 991978 10124660 ~ 10129902 (-) True XLOC_005200
TCONS_00010030 lncRNA upstream 1082648 10215330 ~ 10220119 (-) True XLOC_005201
TCONS_00010001 mRNA downstream 9397 9049339 ~ 9087566 (-) False XLOC_005182
TCONS_00009999 mRNA downstream 12323 8968275 ~ 9084640 (-) False XLOC_005182
TCONS_00009997 mRNA downstream 138610 8954761 ~ 8958353 (-) False XLOC_005181
TCONS_00009998 mRNA downstream 138952 8956399 ~ 8958011 (-) True XLOC_005181
TCONS_00009993 mRNA downstream 278964 8581875 ~ 8817999 (-) False XLOC_005179
TCONS_00010007 mRNA upstream 124775 9257457 ~ 9294819 (-) True XLOC_005186
TCONS_00010010 mRNA upstream 227639 9360321 ~ 9438227 (-) True XLOC_005188
TCONS_00010011 mRNA upstream 316983 9449665 ~ 9468618 (-) False XLOC_005189
TCONS_00010012 mRNA upstream 316985 9449667 ~ 9468618 (-) True XLOC_005189
TCONS_00010013 mRNA upstream 350193 9482875 ~ 9498060 (-) True XLOC_005190
TCONS_00010002 other downstream 45785 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00009996 other downstream 236656 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00009989 other downstream 652942 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009977 other downstream 1593865 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009972 other downstream 1861860 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00010008 other upstream 212682 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010009 other upstream 227634 9360316 ~ 9363873 (-) False XLOC_005188
TCONS_00010015 other upstream 377898 9510580 ~ 9516981 (-) False XLOC_005191
TCONS_00010016 other upstream 378189 9510871 ~ 9516953 (-) True XLOC_005191
TCONS_00010021 other upstream 515546 9648228 ~ 9648345 (-) True XLOC_005195

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_00757837_00764506.mRNA True 1171 mRNA 0.47 9 CI01000047 757837 ~ 764506 (+)