RNA id: XM_043247386.1


Basic Information

Item Value
RNA id XM_043247386.1
length 5548
RNA type mRNA
GC content 0.46
exon number 12
gene id ccdc120a
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4029303 ~ 4073897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTAGATCAAGTCGGGATAAAATCTCCAGCCCTTGCGGATGGAGGGTGTAGAGGGGCTGGCATTACAGCATGCCGTGTAAACACAGGGGTGTGTGTTGAAGAACAGGCGATGATCATCGCGACGATCCGGGATCGATGAGCGGGAGACAGTCATGCAGCTCGTCGAAGGACTAAAGACGCTCTGGAGATGCTCGTGAGGTGACGCAGAGGGACGCACGTGGATGGCAGAGGCTCCGGCATCCTCTCAGcagtttggactcattctgacggcacccattcactgcagaggatccgttgGTAAGCAGATGATGAactgctacatttctccaaatctacatattggatgacatgagggGCATTGAGTTTGTGAAGCGTTGCGCAGCAGCACAGTGGCTCCCCTCTCAGGCCGGTCTCGGTACCGCAGCATCACCCAGCCACAAATCTGCTTCATGGCCACAAGTCCAGACCTCTGCGGTACATATGACTGTTACCAGAAGGTGAGAAGATAAACTTACGATCAGGAGGCAGTGAGGTGATGCAAAAGACGTATGACatggaggtcaaaggtcacctgATAACAGGCCCCGaGCTGCAGGCCGCTCTGGACAGTAAGCAGCGCGCGGAGCGGATGGTGGAGCTGCAGGAGCGGCGCAGGAGTCTTCAGTCGCTGCTCAACACTCGGATAGCAGAACTCAGACGCGTGTGTCTGCAGGAGGCGGTCAGTGTCCGGAAGACAAATCAGAATATAGCCAAGTTAACTATAGAATTGACGGGCGAAGTTCCTCATGAATATCCTCTGGAAACCGGAGAGAAGCTCCCTCATGTGCGGCGCAGGGCTGGACTGTCCCGCGGCGGCTCCAAACATAACACCAAAAATGAGGAAGAGGACGTCTCTCAGCGCAAGACAAAGAAAACCCTGTTCAGCGGCGCCCTCCGCAGGCACGCCGACTCAGAACAGCATCCTCCGCACAGCAAACGAACGGTTCATAGAGGATGCCACACAGATAACACGGTGAAGTCAGAGAGCAGCTCCACGTCTGATTCCACCAATCAGGACACTGAAGATGCCTCTGACGGCCTGTCGACCTCGCAGCCCCGGCTGGTCTCGGGGAGCCCAGACAACAGGTTTTCACGAAAACTCTCCCCTGTGGAGATCTATTACGAGATGAAAACACGCCGCAACTCTGTGGCCAGCTCAGCCAGCCCGAGTCACTCTCTTCCAAGAAGTGTGTCGAATCTGGAAGGTAGAAGTGTCCCGGCAACTCCGCTCCTGTCCCGCAATGGAATAGCAGGAGTGCACATCAGgtCAGAATCCTCCAGCGGCACTGCTGCTGTGAAGCAGTGGTCAGACAATCCCGAGGCGTCCCATCAGGTGCCTCTGCAGTCTCAGGAGGGGTCGTCCTCAGGGTCCTACGAGCAAGGACACAGACGCAGCAATAGCTCAGAGACGTTGCTCGATCGGCACGGCACCTCAGCGGAGGACGGAGGTCAAAGGTCGGGCATGCCTGTACGGAACGGCCCGTACAAGAGCTCGGAAGCCATCATGGACACGACGTTAAAACAGGCGCAGCGGAGCAGCCCCGAGCGGCAGGCGAACGGGCACGCCGAGCTGTCCCGCGTTCGCTCGGCCGCGGGAGGTCGAGGAACGAACGGAGGTGTCGGTTACAGTGAGATCCTCATGGATTACGTGTGGGGGAAGCAGCAGAAGATTCAAGCTCAGCAACAACAAAGACTGCAGGTGCAGAGTAACGCGAAAGCCCGGCCGTGGCCCGACGGTCCCAGCGCTCCTCCGCCTCCCTACAGGAACGGCTTCCCCCAATCGCAGCAGCTTATTTTGAGCAACGGCCCTCCGGCCTACAGCCCTCTAATGCTGAGAGGGAAACCCGGCGAGCCACGGCGGGTCAAAGTGTCCCGCACCAAATCCTGCGGCCCGTTCGTTCCCTTGCAGCAGCACCAGCAAGAGTCCATCCTGCTCTCTGCCTACAACGAAAGCAACACCTCCAACGGTACTGCTGTTAATGTGACGCAGATGGACCACCTCCACAGACCGCCCCATTACCCTCTCGACTCCTCCGCGCCCACGACCCCCGACGACCCCACGCGCAGCCTGCACAAGGCCCTGGCGCTGGAGGGCTTGAGAGACTGGTATCTGAGGAACGCTCTGGGACAGACGGCTAACGGAGGGAAGGGTAAAGAGGGGACTCAGACTCAGCGCAGGCGTACCACATCCTCTCTGCACAACTCCCAGCCCCATCCGCCGCTCAAGCACCAGCCGCAGTCCTTCCAGACGGACACGTCCTATCCACAGATCCCCCAGTCGGCCACCTTTCATGGACACCCGCTACACGGAAGGTCGATGGAGCTTTCTTTGTTCCAAGATACCTTTTCATCTAAGATGCAGGACATGACCCTTAAAGAGAGCAGTAACGACAGACCCACGCCAGGCACGCTGGTCTGACACGCAAACACACGATCTCACACAGACTACAGCAAACACCAGCTTACGCGTGTAGAAAATGGCAGACCGAGAGAATGCCAAAATggactactaaaaaaaaaccaaaacgttTTGCTTCCTTTCGGCAGTTAGAATTGAAGAATTCCGACAGAAACCAGTCTATCGCCCTTGTTATACTAACATATGCTAAGTACACTTGTACTCAAGACCCTTTTCAGCATGAAATCAAGCTGTCTTCTAGTTTCACGTCATCTCCGACCTGCAGACCTCTTACGATAGTTTCCCTTTTAATCAGCAAAGTTAGTAGCAATCTCTGGCAAAAGAGACGACATGCCAGCACATTCCTATTAGCAAACGATGTGAGATTCTACTTTCTGTCAAACTATTTCCAGCCTCGATGTGGATTTGTCACGAAATGCGTACAAAGAGCTCATTCGCGAGAATCTGCGAAAGCTTCCACGAGTAGTTTCCGGACGTGTTAGGCCCTTTGGAAAAGAATCAGGATCTCCTCGATGTTTTTATGGAAATGTTTCTATGCAAATTAACAATCAAGAAGACTGTGTTTAGACGAAACGAATCATTTGAGTTTTGGTTTTGTCATTCCGAGtagcaattttaaaatatttaggaGAAAAGAACCAAGCCAAATCGTATACTTTGATGGACTGTTATAGAGTCAGGGACTCATGAAATGTGTGATACCATTAGTATCTTTATTACTGAATCACAACGTGGAGGAGTATAAACGTGCTCATTCAGGAGGATGACAAAAGAATGGCACAAAGGTCGCCGTGCGGCTCAAACAACATCTGTATCACTCGTATTTATGACGCTTTCTTCCTCAGGCTGTAATTATACACCAGTATTATTTACACGGtcgcaaagaaaataaatttacaggtagaataaagaacaaatgacatttgatatattattttaaaatgagtctcatgaaacctgtcaagaacatgCTTTACTccaaactccaaaaaaaaaaaaaacgttttaaaattaattgttttgtcCTGCAgatttgcataattttaaaataaagtaaatcagAGCCTGAGAAAATATCTGCATTATTATCTGCGCAATTTCTgtgactgggaaaaaaaaaagcacttctcGTTGCTCCAAGAGAGGAAAATAATCACATTAATGGATTTAAGGATCATCATTagtatttgttttgatttgtgccgatttaaaaaaaaaaaaagactaaacaaAAACGAGTCCTTTTTGGACGGGATTTTAATTACTGTGATTAATGTGCGTGATCACTAAGAGTaatgagaaatataaaaatgctcaaaagcaaaacaaacggGTGCATTATGATAATGAGAATTGTGCTTGGTTTTCATAAAAATcgtctcaaaataataataataataacataaatggGCGGAAAAGATTGTTTAATACTAATACTTTTGTTATTGTCTTATACTTTCGGTATTGTTTGGTCAAGAAAAATAGgcctgttttgtttatttttttaaatcctataaaaataaaacagtatttttcttTCGATTTTTGGGTTAAAACGTGAGTCGTGTTACATGTTTGGCCGAGACTCCTTGTAATACCATCAAGAATTGATATTATTTTCCACTAGGAGGAGCCCCACTCTCTTGTTTGGAAGGGGTTCTGGATCCAATCAGCATCCGTCGGCTGCAGACGCACTCAAAGCGTTCCTGCCAGGTGCAGTGCTTGTCCCGAGAATCACCAGGTTCTCGTGTATAGCGCCTTAATTGcaattgttcattgttttttccAATCGGATTGACCGCAGATGTCAATATTTACTGTACGTTTCGGTAATTAGATTGCACGAACTGAAAAGGATTAATTAACCGAATCAGGACTTTGCCAAGACTAGTAATTTCCCTACTTTACAATTTATCTGAATTGCGATACTCAGAACATGGCGTCGCCTACTAATGCCAGGATGCCAATCTTTGACCATTGTGCCTAGCAAATGTGGCGGGGAAGGCTTGTAGAAACAATGACTTATCGTTATGTGCATTTCTCACAGCCAGATTAAATAAAGAATTAGGCTTCTGCTTATGAACTACCGATTTTATTCTCACTTTacgactaaaaaaaaaacaacaggctTTTGGATTGCTGGCTAATCCACTCTGAATAGTAGCTGTAGTCTGCTATGTTTTTTAGTGTTAGTGCTCCCTTCAGAAAAAATACCTTGATGTACCAGTGCATGCGGGTATCTGTTCTTCTTTACTCCTTCTCTATTGTTCCCTGATTTTTATTTGGTTCACTGTGTTATCGTTACGTAGGCAACTCGACGGAGGTCTCGAAAAGCTTCTACACGTCAGATGCCTTCACCGTGAATATATCTGTACAATACAACTGAGAGTTGAACTTACTGAAGCAATCTAAACTTTCTCAGATACTTTGTCACCAAATGCTGCCGTGCTTGTCTCAGGACTACACTGAAAGCTGCTTTGATTGTGGACTGTCCATTTGAATCAACGCCACTGATGCATGGAAGTGTCTCTAATAGAAATAACTTCGTTTTTTTTCGATTGAGAAAGTTGGAGAATGTTTATGATGCTTGTAAAACCTCGCTGAGGACATCTATTTCAAATGCTTTGAAAGATCATGTTGCACTCACGTGAAACATGATTACTTCTGTCGATGAAGAAGATCCAATGGATGAAGGCTATGAAGGATGACggccttttatttttgattaaagacTTAATAGCTGTTGATTCAAACTGAAGGCAAATAAAACCAATGAAGTTTGTCGTGTCTGTTTTGCTTTCACGGTACCAAATGTTACAATGTTTTGAAGATGTTCCCTACATGTTTTGGACACTATTGaggattttatttcaatttgtttcaattttaaaaattccTTATCCGAAACCTCTTTATTTGCAGTTTCTCTGCTCGTATGTTTTATCCGTTTTGGAAGAAACCTTTCAGACTGTATATAGGCTTATTTGCTGTTTTCTCTTTGGTTTTCGacattttatatctatataaaaaatctaatgaaaAACCAAGACTGtacaaagtttgtttttaataaagtgtttttggtCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90082 lncRNA upstream 120503 3907712 ~ 3908800 (+) True G60870
TU89958 lncRNA upstream 143430 3884882 ~ 3885873 (+) True G60803
TU89925 lncRNA upstream 202887 3824902 ~ 3826416 (+) True G60782
TU89876 lncRNA upstream 373371 3654761 ~ 3655932 (+) True G60743
XR_006251655.1 lncRNA upstream 421326 3607315 ~ 3607977 (+) False LOC122350949
TU90154 lncRNA downstream 66712 4140609 ~ 4215206 (+) True G60895
TU90322 lncRNA downstream 227775 4301672 ~ 4342107 (+) True G61007
TU90378 lncRNA downstream 359101 4432998 ~ 4436499 (+) True G61048
TU90392 lncRNA downstream 365111 4439008 ~ 4444416 (+) True G61056
TU90437 lncRNA downstream 424980 4498877 ~ 4499407 (+) True G61087
XM_043247619.1 mRNA upstream 1601 4013914 ~ 4027702 (+) False mbd1a
XM_043247613.1 mRNA upstream 1601 4013916 ~ 4027702 (+) False mbd1a
XM_043247617.1 mRNA upstream 1601 4013917 ~ 4027702 (+) False mbd1a
XM_043247616.1 mRNA upstream 1601 4013917 ~ 4027702 (+) False mbd1a
XM_043247618.1 mRNA upstream 1601 4013918 ~ 4027702 (+) False mbd1a
XM_043246727.1 mRNA downstream 1121 4075018 ~ 4091029 (+) True abcd1
XM_043246726.1 mRNA downstream 1122 4075019 ~ 4089402 (+) False abcd1
XM_043247253.1 mRNA downstream 19355 4093252 ~ 4162563 (+) True plxnb3
XM_043247255.1 mRNA downstream 19355 4093252 ~ 4162563 (+) False plxnb3
XM_043247256.1 mRNA downstream 44499 4118396 ~ 4162563 (+) False plxnb3
XR_006251567.1 other upstream 97815 3924861 ~ 3931488 (+) False LOC122350109
TU89939 other upstream 178746 3848614 ~ 3850557 (+) True G60788
TU89218 other upstream 1989467 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1993323 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1996240 2030878 ~ 2033063 (+) False LOC122350053
TU90648 other downstream 1030673 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1030673 5104570 ~ 5263963 (+) True LOC122350082
TU90650 other downstream 1161882 5235779 ~ 5263963 (+) False LOC122350082
TU90653 other downstream 1161882 5235779 ~ 5263963 (+) False LOC122350082
TU90655 other downstream 1164584 5238481 ~ 5263963 (+) False LOC122350082

Expression Profile