RNA id: XM_043247253.1


Basic Information

Item Value
RNA id XM_043247253.1
length 8959
RNA type mRNA
GC content 0.49
exon number 35
gene id plxnb3
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4093252 ~ 4162563 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagaaACACACTTGGATGGACGgatagacagagacagatggacagatagacaacagatagatagacaactGGGAATACAGACAAACGGTTAGATAGATGCAGTTTCTGGTAAATAGACACAATTGgagatatagacagacagatgagtATACGGTTTAAGGGATGTTCAATAAagagatgatggatggatgattttAATCCCACGAGTGAAGTATCAGACGCGCGTCCGCCTTTGACCGAAGGGTGTCGCTGTGGCTCTGTACAAGGTGCATCAGCACCGCTCCCTGCCTCCGTTTCATTCCCGTGAGAAATGACTTTCAGCTCCAGTGTCCGTGactccgtctgtctgtctgtctgtctgtcatccaCGTGTTGCGCTTCGCGTCTCGCGTCCCGGCGGCTGATTCACCGGGAAGTTTCGATGCTCCGGGAATAACAGCGCCAAACAGAGCCCCGACAGGAGCCGCGAGCGGACCGGACTTTTCCATGTCTGACGCGCGTTGACCGACCGCAGACCGTGCCGAAGTGTTTCTGAAGAGAGCGACGGAACGCGGTAAACTGCGGAAGCAGGTGAGGGGGTGCCATGCCAGCTGCTGCTCCCCTGTTGCTGCTCCTCGCCATCTTGTGGTGGCCTTTGGTACTGCCTCTGGCCCCCGGTCATCTTCAGAGCCCCCCTACATTCATCACTCTTAATGGCTCCCGCCTCAATCACCTCCTGCTCGACACCCATTCGGGCCACGTCTACGTCGGGGCAGTAAATGTGCTCTATCACCTCTCCCCAGACTTGCAGCTGCTCTCCTGGGGCAAAACGGGGCCTAAACTGGACAGCCCGGACTGCTTACCCCCTATTGACCCCACCGATTGCACTCAAGCGGAAACCACGGACAACACCAACAAGCTTCTTCTGctggaagagaaagaaagggaacCGCTCAGCCTGATCGTGTGTGGGACCGTCCTGCAGGGAATCTGCGAGAAGCGAAGCTTGGAGAACGTCTCTCAGGTTCTATACAAGACCGATAACCCCGTGGACACTCAGTATGTGGCAGCAAATGACCCTAGAGTGTCCACGGTTGGCGTGGTGGTGGAGCAGAAAGGTGTTCTGCTCATGCTTGTTGGGCGGGGCTACACCAGTAAAGGACCTGGTGGGATCCCGCCAATCACAATGCGACGCTTAACCTCAGTCGCCCGGCACTCTGCGCCAGCATTTTCCCATGAAGAACTTGGTAAACTGGTTGTCGGTAGCTACTCCGAATACAACAACCACTTTGTGAAGGCTTTCCCCCACAACAACTATGTCTATTTTGTGTTCTCTCGGCGCGATGTGTGGGGCAAACGAGAATATCGGACGTATGTTTCAAGACTCTGTGCAGGAGACCCCAATTTCTACTCTTATGTTGAGGTGCCGCTTTCCTGCGGTGGAGGATACAATCTGGCACAGGCAGCTGTACTTGGCTATCACCGTGAACAACCCACGCTGTTTGTGGCTATGGCCATGGGGCAGGCGTCAACTCCCACGCCCACAGACCGGTCGGCTCTTTGTGTGTACAAGGTGGAGGAGCTGGATAAAGCCCTGCATGGCGCCCAGCTACTGTGTTATACACAGGAGGGCAAAGATGCCAACAACAAGGAGAAGGCGTATATAGAATACGAAGTATCCTCAAATTGTCTGAAGCTCCCGCAGGACTCTCTGAATGAGTACCCATGTGGAGGTGAACACACACCCAGTCCTATCGCCAGCGCCATTGCTCTCGAGGCCACGCCCGCTTTCACCTGGACTCCTCCCATCACCGCTGTCACAACAGCAACTGAAGTTGGCCACACCATAGTGCTGCTAGGAGACAAAAATGGAAGACTGCACAAGgtGTTCTTGCATGCAAATGGTACCGGTACCAAATATGACACAGTGGAGGTGGATGCTGAGAGTCCCATTAACGCTGACCTGCTGTTGGACTCCACCAAACAGAACGTCTACGTATTAACCGAAAGAAAGgttaCAAAGCTCCATGTCGCTCAGTGTGAGAAGCATTTAGACTGCCACTCCTGTCTGTCTAATAGAGATCCCTACTGCGGCTGGTGTTCGCTGGAGGGCAGATGCACAAGGAAGATGGACTGTGCACGGCACGCTCAGCCTCACCACTGGATCTGGAGCTACAGCCGCGAGCGACAGTGTGTGTCCATAGAGAGTCTACACCCCTCCATTCAGAGCAGAGAAGAGCAGACGCAGGTCTCTTTCACAGTTCTACAGTTGCCGGTCTTGTCAAAGGATGAGTCTCTATCTTGCGCTTTTGGGAGTTTGGCTGCTCAGCCTGCGGTTGTCATGGAGAACAGAATCACATGTCAATCACCGGCTCCAGAGCAGCTCCCCTCGAGTCCGCCAGGCAACGaTCACGTGTCCGTTCGAATGGCGCTGAAGTTTGGAGAGGTGACCATCTCGCATACGAATATCACTTTTTACGATTGTAAAGCAGTCGGACGGCTCAACGCAACCTCACCGTGCATGGCGTGTGTTAGCAGTATGTGGCCGTGTCATTGGTGTGTGAAGGATGAGCTCTGCAGTCATGATAAGAGCTGCCCTCGTCAGAACGTCATCTATAACAGCAGGGAGCAGTCCTCACCCCGCGGGCCAGACTCTTGCCCCTGCGTCTGGGCCCTGCAGAGCTCCCCTCTGGTTCCTGTTGGCTTTGACACCGAGCTCTCCCTGCAGGGCAAAAACCTGGACATATTTGAGGATGAGGAAGATTATGCTTGCGTGCTGGTCATCGAAGGCCAGGAGCTGCGCTTGCCAGCCATCTTGGATCGCAGCAAAGAGACGGGGACGCATGTGTTCAAGTGTGCCGCTCATCAGtttCGTTACTCAGGAAAGCAGTTTGAATATTTCGCTCCTGTATATCTGCAATGGGGGACGCAGCGCATAGATTCAGCACCACATCTCCGCTtgCAGCTGTACGACTGCTCAGTGGGACAGTCCGACTGCAGCCAGTGTCGCGCGGTTGCGGCCAATTACGGATGTGTGTGGTGTGCCGACGAAACCCCCGGCTGTGTGTATAACCAGTCCTGCACCAGCGGAACCATGGACACCTGTCCTCCTCCTCTAATTACTGAGGTTGAGCCGCTGACTGGGCCACTGGAGGGCGGCATCCTGCTGACTATCCAGGGATCGAATCTGGGCCAGAGCTTCCAGGACATCGAGGCAGGAGTGACCGTGGCAGGGGTGACCTGCACCCCTCTGCCCGAGGCCTATCGTATTTCCACCAGTATTGTGTGTGAGCTCCAAGCCAGCGCAAATGTCACAGCCGGACCGGTCGTCATCACCGTCAGAGGTTCAGAGAAAGGAGAGTCCCAGCAGACGTTCTCATATCAGAATCCACAGCTGAGCCGAATTGTGCCGGAAAAAGGGCCTTTAGCTGGGGGCACGATGCTAACGGTCCATGGGTCGCAGCTCCTGACGGGACAACGAACTGAACAAAGGAGCGACCAAATCGCTGGCCTGCAGGCCTTCTTGGGCTCAAAGCCCTGTCGCATCCATGAAGTGAGTGACACACGGCTGATTTGTCGCACCAGTCACTCCAACCAAACTGGAAGAGTGCCAGTCAAAGTAGTGTTTGGAAAAGCAGAGAGGATTTTGGATAAGGTTCTCTTCAGCTATATGGAAGACCCAGTGATTACCGATGCAACTCCTACGGAGAGTTTCTATGGGGGTGGGCGTCTTATATACGTGACGGGCCAAAACCTGAATGTCGTTCAGCAGCCGAAGATGTCAGTCTCTTATGAGCCTAGAGAGAGGACAGAAGTCAGAAGACGTCGACACACCCACGTTTCTATCAGGAATCCCTTGGTTATGATTCAGGAGTTGTGCACCAATGTGACCTCGGAGAGGATGATTTGCAAGAGCCCAGCGGTGGAGCCGAAATCCAGGATAGTGCGAGTGTGGTTCGAGATGGACAACGTGCACATCGACTTTCCTACCATAAAGAACAAGCCATTCACGTATCACCCAAACCCAGACTTATTCCAACTCAACAGTGAGTCGCGAGGAACTCCCATCCGATTCAAACCTGGAGGAGTCCTGGCCGTAGAGGGTAAGGGACTGACAGTGGCTATGAGCCGAGAGGAAGTTGTGGCCCGGCTAGGAGACAAGGAGTGTGACGTCAAGACTCTAGATAACACACACCTGTACTGCGAACCACCTGAGGAACAGCCTTTAGCCCTGGAGGACACTGACTTACCCAGACTGAAGGTGTTAATGGGAAGCCTGGCGTTTGACTTGGGTCTAGTGCAGTATGACAGTGATTTACACTCCTCGGTGCCTCTGGCAGCTCAGATCGGCCTGGCAGCGGGGGCCGCGGTGGTCGTTCTCATCGTGCTGGTTATAATTCTCATGTACAGGCGGAAGAGTAAACAAGCTCTGAGAGACTATAAAAAGGTTCTGGTGCAGCTGGAGACGTTGGAGATAAATGTAGGAGACCAGTGCAGGAAAGAGTTCACTGATCTGATGACGGAGATGATGGATTTGAGCAGTGACGTTGGTGGTCCTGGCATCCCCTTTCTGGATTACCGCACATACGCGGAGCGTGTTTTCTTCCCCGGCCAGAAGGGTGCGCCTCTGAGTCAGAATCTGGATTTGCCTGATTCTCGCAGACAGACGGTGGAGCAGGGCCTGGGTCAGCTTAACAACCTGCTCAACAACAGACTCTTCCTTATACGGTTCATTCATACTCTGGAGGCGCAGCAGAGTTTCTCGCAGAGGGACAGGGGCTACGTCGCGTCTCTTCTAACGATGGCCCTTCATGATAAGCTGGAATACTTCACGGACGTCATGAAGACACTGCTGGGGGATCTAGTGCAGCAATACGTGGCCAAAAATCCCAAACTTATGCTGCGCAGGACAGAGACCGTTGTGGAGAAGATGCTGACCAACTGGATGTCCATCTGTCTCTACTCTTTTCTTAAGGAGGTTGCTGGCGAGCCTCTCTACAAGTTGTACAGGGCTATTAAATACCAGGTAGATAAAGGACCGGTGGATGTAGTGACGGGGAAAGCCAAACGCACTCTCAACGACAGCCACCTGCTCAGAGAGGACATTGACTACTGCTCAGTGacTCTGACTGTGTTGGTGAAGAGCGGTGTGGAGGTCCAGCCCTGTCCTGTTAAAGTTCTGGACTCTGACACCATCACTCAGGTTAAAGATAAAATCCTGGACCAGATTTATAAAGGAGCACCTTACTCCCAAAGACCAGCCGCGGACTCACTGGACCTCGAGTGGCGCTCAGGCCAGGCGGGTCACCTGACTCTTTCTGATGACGACGTCACAGCCATCGTTCAGGGTCGCTGGAAACGGATCAACACCTTACAGCACTACAAGGTTCCTGATGGGGCCACTGTGGCTCTCATCCCTCGTTCCCAGAGTTCTCTTGGAGTAAATCAGTTCTATCAGACTGGAGAGAAAACTCCCATGctggagggagaggaggaggaaggtcTTCGTCTATGGCATCTGGTGAAGCCGAGCGAGGACCCTGAGATCCCTAAACACAGGAAGAGCAGcatgagagagagggagagggcaAAAGCCATTCCTGAGATCTACCTTACACGTCTGCTTTCTATGAAGGGCACTCTGCAGAAGTTTGTAGATGATGTCTTTGTAGCCATACTCAGTACCAAACGGCCTCCACCCATCGCTGTCAGATTCTTCTTTGACTTCCTGGATGACATGGCAGAAAAACACGGGATTGACGACCCAGAGACCGTTCACATATGGAAAACAAATAGTTTGCCTTTGCGTTTCTGGGTCAACATCTTGAAGAATCCTCAGTTCGTCTTCGACGTGCAGGTGACGGATAGCGTGGATGCCGTCCTCTCCGTTATTGCACAGACCTTCATTGATTCCTGCACTACATCCGAGCACAAAGTGGGCCGGGATTCTCCAGTGAATAAGCTGTTGTATGCCCGAGAAATCCCACGATACAAGCAGCTGGTGGAGAGGTACTACAGTGATATTCATAACGCAGTGTCTGGCTGCTACCAGGAAATGAATTCAACCCTCACAGAGCTGTCAGGGAGCTTTGCATCCGAGATGAACAGTTTGGTGGCGTTGCATGAGCTATACAAGTACATCAACAAATACTACGATCAGATTATCATGTCTCTGGAAGAAGACGCTGCGGGTCAGAAGATGCAGCTGGCATATCGGCTTCAGCAGGTCGCCGCCCTGGTCGAGAATAAAGTCACAGACCTTTAGGCTTTGACCTTTCGCCTTGTCGTCTACGCTCACCAATAATCACGTCTTATCTCGCGTGATCGGCCGAAGAAACGCGACCACTGCGCCAAACACCCGTGTGCTTCCACAACCGTTCGCTTAAACTACCTGCATATTATTGACAAAAGAGAACCGAAAAGGAAGTAATGATCACTTTCTACTGATAAAACCTTAATGGGAATTTTATTGGAGAAGGATTGCTTTTCAGGCTGAGGCTCTGAACGATTCACAGGAGTATTGACTacgaaaagtgtgtgtgtgtgtgtgcgcatggttaattgtgtttgtctgaaaggcTCTGTTGTGTATATATGAAGTTTACCTAATTCAAGACTATTTTAATGACACTACTGAAGCAGCTCTCACATTTCGTGACATGCTGAGACACATTTTATACCATTTCTATTTCTGTTCAAGCGATCGCATCCACTGTATGGAGTTTCATGAACTGATTCAGCGAATCAAATCCCACTTTTACTTCAGCTGGAGTATTTCGTTCCGGGTTTAGTGAAGTTCTACCCCTCCGCAATCGAAGCCCAAACTCACAGACTGTCCTTGGCCGTGTggtgttaacttttttttttttttactaacattAGTATTGCAGATCAAAACAAGTATTGAGCTTTTGCAGGGGCTGTAGAGTACGTCTATGCACACAAGTGCCATAACAAGTTATAAGAGCACAATATTCGTGTGCACGTTATTGTGTAGCTTTAGGTGtgcatgcaacaaaaaaaaaagacaatgtgaCAGTTTTCAGGTTTTCCGCTGTTGTTAGCATCTCAAATATTAGTATCATCTGAATTCGGTTTGTAGTACTCGACTTCACCAAATCAGATTTCTGATAGATCCCTATAAAATATGGGTCTGGGTCACATTTCACTTCCAAATCAACAGAATGCACAGTATACCTTATTCGTAAACGCCAATGTATAcgattggggttttttttcttccttttatcGGGAATAGGTTGTTGCATTGCTTCTTAAACCTCACCGAGATGTTTCACACTGCAattcaaatgtcatttttgaaatCGTAAGATTCGCTCACGCTTACAGTAGACGGGATCGATTTGCTTACGCCCTGCTTTGTATTTGATAGCACAAGCGAGAACGATTCAAGATTCAATCTCAAGCGCTTCAAATCTCGAATGAAAAAGCGACGCAGCTGGGTTGGCCGCTCTCTCGGGAGGTATTGACACAAAACTGGGACAGTTTGGGTCACTGGTTTTGGAGTTGGCAAATGCAGAATGGCATCTTTATTCACTAGGTCCCCACGATTAGAAAAGCAGCAGTCGGATTGAAAGTTGTGTACATCAGACACTGAATAGAAACTAActtattatattgtaaataatgctTATTTATACATGACCGCCAATGTGCCttctttgttactttttataaCGTCTACCGATTTAAGTAAACATGCTTGACATTACTTGCCAAATGGAGGAAAAGATGAACTGTGGCACAACTGTTGCCTGTTGTGAGGATCATACTGGGCTTTTAGTCTCAGGATTACAGCCGTCGATCTCAATGGATTCAGTATAAATCCATGTTTTAGCTCAATCATTTCTAGTTTGCCCCTTCGGCTCATTTCCTTTTCAATCaaatttttttgctcatttttttaaacggtCATGATTCGTTTTTCCGCCTGAAGCGCTTTGCGTTCACCCACGCCGtctaattattatgtttttttttttttttgtagtttgatCATGAAGTTGACGTCATGCGCTTTAACTCCATCCTTTTGTGTATAGAACTGAAAATAATGAATTCCCTGCTATCCGGACATCTCCGATGTGTTTTCGAAGGCTTCCCTGttcctgcatttatttatgtgattttgAGCTATCACGCTTCATCATACTAATGTATGCACAgagttgtgttttaaaaatgagaaacgTATTAGTTCGCTCAtcctgtgtatgtttattagcCTGTTGTTGAACGTGTTTGGCCTCTTGGtgtatttttttgattattataggCTGATGCATGCTTGAGatttgattggattttctgattGGGGTGCTTTGTGAGAGGTTCGCTCGATGGACTGCGTTATGAGTGCGTGACTCTCACAAGAACACGGAGGAaagcgtgtgcgtgtgcatgaGAGTTTGTAAGTAATTGTGGCGCTCCGTACACGGTCGGCGAGGTTTTTTTGGCGAATCTCCGGTTATGCACCGTTTTTCTCTGAGAGAATCCCGCGAAAGCTTCTTTTTGTACAGTCTTGCGATTTCCTGTTTTGCCAGTTGTGTGGAATATGGCTTTGTATCTTTGCAGATAAACAATTCAGACCACCGTTTAGAGAATCGTTGGTGTGCATGGAGCCCTTGCCCGGCACCGAGTTTTACACAACTTTTATacaagggtaaaaaaaaaataataatatatggtAATTTTCTAATGAAGTTGGGGTTTAAAAGAGAGCTTACACCCGGTCTAAAGACTTTActcttttgtatttgtattgtgtATAGTTTGCTAACAATTGTGTATATGTGCCTGTACATATTGTGAAGAGgacttgttcttttttttgtttttggattttgtttttcagcagaCTTACTCTCTCCATTCAGGAGAAATTGGGAgccaaaatgttgaaatgagtGAAATGGAAATTTGTATctggaaaaaataaagctataattttaacaatgaa

Function

GO: NA

KEGG:

id description
K06821 PLXNB; plexin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90082 lncRNA upstream 184452 3907712 ~ 3908800 (+) True G60870
TU89958 lncRNA upstream 207379 3884882 ~ 3885873 (+) True G60803
TU89925 lncRNA upstream 266836 3824902 ~ 3826416 (+) True G60782
TU89876 lncRNA upstream 437320 3654761 ~ 3655932 (+) True G60743
XR_006251655.1 lncRNA upstream 485275 3607315 ~ 3607977 (+) False LOC122350949
TU90322 lncRNA downstream 139109 4301672 ~ 4342107 (+) True G61007
TU90378 lncRNA downstream 270435 4432998 ~ 4436499 (+) True G61048
TU90392 lncRNA downstream 276445 4439008 ~ 4444416 (+) True G61056
TU90437 lncRNA downstream 336314 4498877 ~ 4499407 (+) True G61087
TU90439 lncRNA downstream 347441 4510004 ~ 4513565 (+) True G61089
XM_043246727.1 mRNA upstream 2223 4075018 ~ 4091029 (+) True abcd1
XM_043246726.1 mRNA upstream 3850 4075019 ~ 4089402 (+) False abcd1
XM_043247383.1 mRNA upstream 19355 4048619 ~ 4073897 (+) True ccdc120a
XM_043245985.1 mRNA downstream 1976 4164539 ~ 4182039 (+) True srpk3
XM_043247424.1 mRNA downstream 55855 4218418 ~ 4226247 (+) True comta
XM_043246706.1 mRNA downstream 74538 4237101 ~ 4290685 (+) True grm6a
XM_043246705.1 mRNA downstream 129918 4292481 ~ 4310462 (+) True usp11
XM_043246709.1 mRNA downstream 153922 4316485 ~ 4318124 (+) True uxt
XR_006251613.1 other upstream 19355 4048619 ~ 4073897 (+) False ccdc120a
XR_006251567.1 other upstream 161764 3924861 ~ 3931488 (+) False LOC122350109
TU89939 other upstream 242695 3848614 ~ 3850557 (+) True G60788
TU89218 other upstream 2053416 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 2057272 2033892 ~ 2035980 (+) True LOC122350053
TU90648 other downstream 942007 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 942007 5104570 ~ 5263963 (+) True LOC122350082
TU90650 other downstream 1073216 5235779 ~ 5263963 (+) False LOC122350082
TU90653 other downstream 1073216 5235779 ~ 5263963 (+) False LOC122350082
TU90655 other downstream 1075918 5238481 ~ 5263963 (+) False LOC122350082

Expression Profile