RNA id: TU90154


Basic Information

Item Value
RNA id TU90154
length 276
lncRNA type read_through
GC content 0.50
exon number 2
gene id G60895
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4140609 ~ 4215206 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCCGTGTGTGCTTgtgtaaatgagtgtgtgttgcTCGTGTAATCTTAACAGCAGTAATAATATCCCAAAGCGGCCGCGCTCTCCCAATAGTCCTCGGCCATGATCCTCTACTCCTGCTGCTGTTTGTCCGGTCTCCAATGCTGCTGGAGCGACTCCTTTAGACCCCGCATGTCTCACCGCTGCTCCTTCTCTCTTGAAATTGCTAAAACGTTACAGCAGCTGTTCCTTTCCTTGCCAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90082 lncRNA upstream 231809 3907712 ~ 3908800 (+) True G60870
TU89958 lncRNA upstream 254736 3884882 ~ 3885873 (+) True G60803
TU89925 lncRNA upstream 314193 3824902 ~ 3826416 (+) True G60782
TU89876 lncRNA upstream 484677 3654761 ~ 3655932 (+) True G60743
XR_006251656.1 lncRNA upstream 532632 3607315 ~ 3607977 (+) True LOC122350949
TU90322 lncRNA downstream 86466 4301672 ~ 4342107 (+) True G61007
TU90378 lncRNA downstream 217792 4432998 ~ 4436499 (+) True G61048
TU90392 lncRNA downstream 223802 4439008 ~ 4444416 (+) True G61056
TU90437 lncRNA downstream 283671 4498877 ~ 4499407 (+) True G61087
TU90439 lncRNA downstream 294798 4510004 ~ 4513565 (+) True G61089
XM_043246727.1 mRNA upstream 49580 4075018 ~ 4091029 (+) True abcd1
XM_043246726.1 mRNA upstream 51207 4075019 ~ 4089402 (+) False abcd1
XM_043247386.1 mRNA upstream 66712 4029303 ~ 4073897 (+) False ccdc120a
XM_043247387.1 mRNA upstream 66712 4029303 ~ 4073897 (+) False ccdc120a
XM_043247384.1 mRNA upstream 66712 4029303 ~ 4073897 (+) False ccdc120a
XM_043247424.1 mRNA downstream 3212 4218418 ~ 4226247 (+) True comta
XM_043246706.1 mRNA downstream 21895 4237101 ~ 4290685 (+) True grm6a
XM_043246705.1 mRNA downstream 77275 4292481 ~ 4310462 (+) True usp11
XM_043246709.1 mRNA downstream 101279 4316485 ~ 4318124 (+) True uxt
XM_043247197.1 mRNA downstream 104555 4319761 ~ 4334302 (+) True elk1
XR_006251613.1 other upstream 66712 4048619 ~ 4073897 (+) False ccdc120a
XR_006251567.1 other upstream 209121 3924861 ~ 3931488 (+) False LOC122350109
TU89939 other upstream 290052 3848614 ~ 3850557 (+) True G60788
TU89218 other upstream 2100773 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 2104629 2033892 ~ 2035980 (+) True LOC122350053
TU90648 other downstream 889364 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 889364 5104570 ~ 5263963 (+) True LOC122350082
TU90650 other downstream 1020573 5235779 ~ 5263963 (+) False LOC122350082
TU90653 other downstream 1020573 5235779 ~ 5263963 (+) False LOC122350082
TU90655 other downstream 1023275 5238481 ~ 5263963 (+) False LOC122350082

Expression Profile