RNA id: XM_007249578.3


Basic Information

Item Value
RNA id XM_007249578.3
length 3638
RNA type mRNA
GC content 0.43
exon number 18
gene id LOC103045642
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14120999 ~ 14135976 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGTGCATGCCGAGGTTGTGCGTTAGCAGGTGACGTTAGCTGATGTAAAGGGGAAAGGAAAGGACAGCGGGCCGAGCGCAGGGTCAGTTTTTTCAGGCAGTCGGAGAACAGCGCTGAATAATGTTCCTTTTAAACGCGTCTTTTCAGCCTCAGGTTACTGTGCCATTGACCCACATTATCAATGCACTGCACTCCTTGAAAAATTCAGCCAACTCTGTGGCTACTGCTTCAGTTCAGAGTCTACAGAGAGATGTTTCGCCAGATCCCGGCCTGCTTCTCAACAAGACTGAAGGACAGCCTATACTAAACCTTAAGGACCTGGGCCTATCCGAACTGAGACTGAGTGGAGCAAATGAGCTGTTGAGCAGGTTGCTCCCCACCCTCTCTCCTGAGGACACTTCACAACCTGCCGTGTGCCATGCCTCCTCAAGATGGAGAACTTCTCATGTTTCTACAGATTCCTTCTTTCACAACAAACATGGCTCCTCCCACAGAAGACCTGGACTCTTCAGTTCTTCAGTGTTTTACAGACCAAATTCCAGTCCTCTTCAAGATGTTTCCTCAGATCTTCAGTGGTTACAAGTGTGTGTCCAAAAAAGAGGTTTTAAGACTTTAAGGTCCAAGACTAGACGACTGCAGTCTAGCTATGACAGTCCTGCAGAACCAGAAGGCTACACTCCAGCTTTTATGAAGggtCTCCTCatgagggaaaaaaatgaagctgAAAGCCTTGACCAATTAACGAGACAGAAAAATCTTCCTGAGAATCAACAAGACGCCTTTAAGACTGGTTTCACTGAAGGCTTTATGAAATCTCAAGCCTTAATGCAGAGGACACAAGACTCACTAAAGAGGACCCGTCTGGTTTTGCTTGTCCTACTGCTTATTGGCCTCTATGGTTTGTCAAGAACCCCATTTCTCTCGGtgcgCTTCCGTACCACTTCTGGCTTGGATTCTGCACTTGATCCTGTCCAAATGAAGAATGTCACCTTCGAGCATGTTAAAGGTGTGGAGGAGGCAAAGAATGAGCTTCAGGACATTGTTGAGTTCTTGAAGTATCCGCAGAAATTCACTTCACTTGGTGGAAAACTGCCAAAAGGTGTCCTCCTGGTGGGACCCCCTGGTACTGGAAAGACCCTGCTTGCCAGAGCAGTGGCAGGAGAGGCAGATGTGCCGTTTTACTATGCATCAGGATCAGAGTTTGATGAGATGTTTGTGGGTGTGGGAGCAAGTCGCATCAGGAACCTTTTCAagGAGGCAAAAGCTAGTGCCCCCTGTGTGATCTTCATCGATGAGCTGGACAGTGTAGGTGGAAAAAGAATAGAGTCCCCCATGCACCCATATTCACGACAGACCATTAACCAGCTACTTGCAGAAATGGATGGGTTTAAACCGAATGAAGGGGTCATAGTCATTGGGGCAACAAACTTTGCTGAAGCTTTGGACAATGCTTTAGTCAGACCAGGGAGGTTTGACATGCAAGTCACGGTACCCAGACCCGATGTCAAAGGGCGTACAGAGATCCTCAACTGGTACTTAAAGAAAATCGTAGTGGATCCTGATGTGGATGCAGAAATCATCGCCAGGGGAACAGTGGGCTTCTCTGGAGCAGAGCTGGAGAACTTGGTGAACCAGGCTGCGCTGAAGGCTGCTGTAGATGGAAAGGAGACTGTGACGATGAAAGAGCTGGAGTTTGCTAAAGACAAGATCCTTATGGGCCCAGAGCGCAGGAGTGTGAAGATAGACAGGAAAAACAAGACGATCACAGCTTACCATGAATCTGGTCATGCCATTGTGGCCTATTATACCAAAGACGCAATGCCCATCAACAAAGCCACCATCATGCCTCGGGGGCCCACCCTTGGTCAtGTGTCCCTGCTGCCTGAAAATGACCAGTGGAGTGAGACACGTGCTCAGCTGTTGGCTCAGATGGATGTCAGTATGGGTGGCAGGGTTGCAGAGGAGCTCATCTTTGGGGGTGAAAACATCACTACTGGAGCATCAAGTGATTTCGATGGAGCCACTAAGATTGCAAAGATGATGGTTACACGATTTGGAATGAGTGACAAGCTGGGAGTCATGACCTACTCTGACCTGTCCAAACATAGCCCGGAGACACAAGCTGCTGTTGAGCAGGAAGTCAGAGTTCTCCTACAGGACTCCTATGAGCGTGCTAAGAAAATCCTCAAGACATACAGCAAAGAACACAAGATCCTGGCAGATGCTCTCCTTACTTATGAGACTCTAGATGCTAAGGAAATTCAGATGGTCCTGGAGGGCAAATCTCTGGACCCAAGATGATGTTAATAGGGGATTCAAAAAGACCAGACTAACCTTATTCATTTAAGCATAAACAGTGGAATGAGTGAAGCATTTGAAACTATTTTCAGTTTTTCCTCTGTCAATCAACTGAtacaaatgtactgaaatgtTACTTTTTCTAAAATTCCACATTATCTATCTCTGAAAAAGTGATTCTGGAAGTTCTTTAGGCTTCTCAGGTTTTTGCGAACAAGTTAAAATATCTTATTGCACAACAAACTGGTCCACAGTGGAACACAGTGGAATGCTGCCACTctatatttgcatactggtaAGTGCTGAGGATTTCTAAGGACCCTGTATGCAACAAACATGCTTGTAGCTCTCGGAATGTTTAGTAAGGCACATAACAGAGAGCAACAACCCCATTGCCATGAATTATTTGGGTGATGCATAAAATAACTGTTTCACAGTAAAACTCAATCAGTATATGTTTTACATATCCTAGACTTTACTAAGCTAATCTTTTGTCACCATCTAAATCTGTACAGCAAGCTTTTGTGGAAGAACCCTTGTTTCTGATGAAAGATTTTTCAGTTATTCTAAGTAAGTAGTCTCCAGATAGCACTTTATCATGACAATATATTCTTTTGAAACAGTGTGCATGGTGTTTTGTTTGAGACACAACCTTTGATAGTGATATCATCATCCTTGACATGAAGCCTGGATGGTTTGAGCCAATTATCTGATTTTATATAATTGGAGAAAAGCCCTTTTAATGCAGTGCTGTACAGCCTCAATTAGGAGAGGAATGTAACATCTGAATTTCAGTATTACTGTAATGTCAATTACAAGGGCTAGGTCTTGTTGCTATTAAGATTCATATTCTTCATAGCTTCATATTTATGAAATTTCACACATTTGAGCGAATTGACAAACATACTAGAGtatttttagagattttttttccattgctcAAAAGAAATGATGGGTGAAAGTAGCTACCATAGCTCACTgttgcaggttttttttttctccacatcaGCTGGAATGTTTTCTAAGGTGTTTGCATACACCTGTGATTTAtgtagtgatttatttatttatttgtctattATTTGTCAAGATGCTGGTGAAATATCTGTTtaatatcttatcttatctgtgCCCATTTGCTATGGACAGTCTGTGAGTGACAACAAAAGTACAGCAGCAACAATGtatataattgtgtgtgtattttctttttctttttttattattattttctttttcttttttgggtgGATGGCGGGTTGTTCTTTTCTAAGAATGACTCCCCAGAGAGCCCAGTTAAAATAGACAACAAACCAATAAAGtgtactgaaaataaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121974 lncRNA upstream 115551 14005234 ~ 14005448 (+) True G90678
TU121936 lncRNA upstream 531755 13559581 ~ 13589244 (+) True G90645
TU121916 lncRNA upstream 618235 13502292 ~ 13502764 (+) True G90625
TU121918 lncRNA upstream 636401 13484138 ~ 13484598 (+) True G90627
TU121913 lncRNA upstream 666498 13454169 ~ 13454501 (+) True G90622
TU121998 lncRNA downstream 50638 14186614 ~ 14189425 (+) True G90692
TU122031 lncRNA downstream 85037 14221013 ~ 14222270 (+) True G90719
TU122160 lncRNA downstream 220624 14356600 ~ 14357694 (+) True G90818
TU122179 lncRNA downstream 377475 14513451 ~ 14514175 (+) True G90836
TU122191 lncRNA downstream 510356 14646332 ~ 14652282 (+) True LOC103029466
XM_007249579.3 mRNA upstream 1336 14110525 ~ 14119663 (+) True LOC103046158
XM_007249580.3 mRNA upstream 1336 14110528 ~ 14119663 (+) False LOC103046158
XM_022673605.1 mRNA upstream 64701 14036972 ~ 14056298 (+) True sim1
XM_022673606.1 mRNA upstream 64701 14043477 ~ 14056298 (+) False sim1
XM_022673357.1 mRNA upstream 86088 13819091 ~ 14034911 (+) True ascc3
XM_007249576.3 mRNA downstream 743 14136719 ~ 14146733 (+) True LOC103045349
XM_022673612.1 mRNA downstream 91651 14227627 ~ 14247306 (+) False LOC103042889
XM_007249569.3 mRNA downstream 93668 14229644 ~ 14247306 (+) True LOC103042889
XM_022673613.1 mRNA downstream 93669 14229645 ~ 14247306 (+) False LOC103042889
XM_022673614.1 mRNA downstream 116027 14252003 ~ 14256689 (+) True LOC103043509
TU121747 other upstream 1172749 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 1964137 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 1982361 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3213827 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 3432179 10688266 ~ 10688820 (+) True G89806
TU122125 other downstream 136088 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 1024239 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 1140277 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 1145533 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 2259238 16395214 ~ 16419380 (+) False trim71

Expression Profile