Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU121998 |
| length | 993 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G90692 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035906.1 |
| NCBI id | CM008309.1 |
| chromosome length | 35377769 |
| location | 14186614 ~ 14189425 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:1901265 | nucleoside phosphate binding | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU121974 | lncRNA | upstream | 181166 | 14005234 ~ 14005448 (+) | True | G90678 |
| TU121936 | lncRNA | upstream | 597370 | 13559581 ~ 13589244 (+) | True | G90645 |
| TU121916 | lncRNA | upstream | 683850 | 13502292 ~ 13502764 (+) | True | G90625 |
| TU121918 | lncRNA | upstream | 702016 | 13484138 ~ 13484598 (+) | True | G90627 |
| TU121913 | lncRNA | upstream | 732113 | 13454169 ~ 13454501 (+) | True | G90622 |
| TU122031 | lncRNA | downstream | 31588 | 14221013 ~ 14222270 (+) | True | G90719 |
| TU122160 | lncRNA | downstream | 167175 | 14356600 ~ 14357694 (+) | True | G90818 |
| TU122179 | lncRNA | downstream | 324026 | 14513451 ~ 14514175 (+) | True | G90836 |
| TU122191 | lncRNA | downstream | 456907 | 14646332 ~ 14652282 (+) | True | LOC103029466 |
| TU122280 | lncRNA | downstream | 473232 | 14662657 ~ 14700071 (+) | True | LOC103045856 |
| XM_007249576.3 | mRNA | upstream | 39881 | 14136719 ~ 14146733 (+) | True | LOC103045349 |
| XM_007249577.3 | mRNA | upstream | 50638 | 14120999 ~ 14135976 (+) | True | LOC103045642 |
| XM_007249578.3 | mRNA | upstream | 50638 | 14120999 ~ 14135976 (+) | False | LOC103045642 |
| XM_007249579.3 | mRNA | upstream | 66951 | 14110525 ~ 14119663 (+) | True | LOC103046158 |
| XM_007249580.3 | mRNA | upstream | 66951 | 14110528 ~ 14119663 (+) | False | LOC103046158 |
| XM_022673612.1 | mRNA | downstream | 38202 | 14227627 ~ 14247306 (+) | False | LOC103042889 |
| XM_007249569.3 | mRNA | downstream | 40219 | 14229644 ~ 14247306 (+) | True | LOC103042889 |
| XM_022673613.1 | mRNA | downstream | 40220 | 14229645 ~ 14247306 (+) | False | LOC103042889 |
| XM_022673614.1 | mRNA | downstream | 62578 | 14252003 ~ 14256689 (+) | True | LOC103043509 |
| XM_007249568.3 | mRNA | downstream | 77292 | 14266717 ~ 14270832 (+) | True | LOC103042587 |
| TU121747 | other | upstream | 1238364 | 12944828 ~ 12948250 (+) | True | npy |
| TU121367 | other | upstream | 2029752 | 12154897 ~ 12156862 (+) | True | G90199 |
| TU121370 | other | upstream | 2047976 | 12135574 ~ 12138638 (+) | False | LOC103025787 |
| TU120940 | other | upstream | 3279442 | 10904644 ~ 10907172 (+) | False | LOC111193328 |
| TU120819 | other | upstream | 3497794 | 10688266 ~ 10688820 (+) | True | G89806 |
| TU122125 | other | downstream | 82639 | 14272064 ~ 14274698 (+) | False | eif1b |
| TU122457 | other | downstream | 970790 | 15160215 ~ 15216508 (+) | True | alg14 |
| TU122479 | other | downstream | 1086828 | 15276253 ~ 15279164 (+) | False | LOC103025288 |
| TU122481 | other | downstream | 1092084 | 15281509 ~ 15283055 (+) | False | LOC103025288 |
| XR_002650442.1 | other | downstream | 2205789 | 16395214 ~ 16419380 (+) | False | trim71 |
