RNA id: XM_022673613.1


Basic Information

Item Value
RNA id XM_022673613.1
length 3273
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103042889
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14227627 ~ 14247306 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAGGCCAGACTGTTTATCAAAATTATACTTGTATCAACAAATAGAAAGGGTGCAAAAACAAGTTGGTTATAAAAAGGATATCAAAAAAAGTTGCGTCcctaaaaaatgataaatgtgaGTAGAACATgtaatccaattttttttaggtAGAGGGCAGTAGAGATTCATAATTAAATACGTCAGATTAAGAATCAAATTGCAAGCAAATGCTGACACTTTGATTATTGAACATTATATGTTAGTAcaatctgttttatatttattttttttttcctcaactCATTACTCAATTACCCACAAATAGTGTAGTCCAGTGTAGTCACACAAATGCTTTTTACAACTgttgttaaaaacattaatctctctctctccctaaatcacaaaacacattttatgcaCATAAGTGGGAGTTTGCATGTGTCTATTATGCTATTACCCTCTTTGTGTCCTCTTGAGGTCTGAACTAACCTGTTTGTCTGGCTGTTTGCTACCCGGAAACTGATCAAAGAGTTGgtgatagagtgagagaaagagagggggagagagaaagagataaaaaagacagagacaACCAAGCTAGTTCCGGTCTTGGGCATACTGAGAGGAGTACCTGTTGATAGTATGATAGAACAACAGAAGGTTGCCAGCAGAAGTAAAAAGTGAGATCTCATGGGTGCCAAAGATAGTGAGAAAGGGTGAGTAAGAAGGGGCGGAGAGACTGTGAAGGGGAGGGAGCTTGCCAGAGCAGGCAGCATAGAGCATGTTCAAAAAATCTCTTGAAATGTCTGAAATGATGTTGCTGTTTGCAGAAGAAAGAAGCTGAGCGTGATGTGAATGTCACTCCTTGAAGAGAACAATATTTGCTTGATCAGATCGGTGGGAGTATGACATGGGTTGAGTTGGATTATGCAACAGCTTTTGAGACGCACTGCAAAATGGAAAACTGAACAAAGTATTAAAAGGTTAAGACATATAGTCTCAGGAAGTGTCTTCGAATGAACTCaaaatgcagaaaaagaaacagaggcATTTTTGGGGAGCTACTCACTTTGGCTACATGACCTCTGGGGGCCCAGCACCAGCCGTGCCACGGGGGGACGAGGCGGACTTTCTGAAGATCCATGTCCGGCACCTCCTAGACAAGACGAACAGGGCCATCCTGCTTTTCAAAGAGGGCAAGGACAAGATGTTTGAGGAAAGGTCTAGCTACAGGAGAAACCTGACAAAGCTTTCACTGCTGTTCAGCCACATGTTGTGGGAGCTGCGAGCCATGTTTCCTGATGGTCGATTCCAGGGTGATATATACAAGCTGACTAAGACAGAGGCACAGGAGTTCTGGAAGAAGACGTTTGGATACAGGTGTATAGTTCAGTGGAGCCAGTTTAAGCATCAGTTAAAACGGGTGCACGGCTTTGAGGAGGGAATGGAGGCCATGGCTCTGAAGTCGACAGTTGATCTCACTTGTAACgatcacatttctgtttttGAGTTCGACATCTTCACCAGGCTGTTTCAGCCCTGGTCAACACTGCTCAGAAACTGGAACCAGTTAGCAGTGACTCACCCCGGATACATGGCCTTCCTGACCTATGATCAGGTCAGAGCTAGACTGGAACATCACAGACATCGTCCTGGCAGCTACATCTTCCGTCTCAGCTGCACACGAATGGGCCAATGGGCCGTTGGCCATGTGACATTTGATGGCAGTATTGTACAAACTATACCAGAGAATACACCTCTCTTTCAGGCCCTGATACAAGGATTCAGAGAGGGATGCTACTTGTACCCAGATGGACGTGATGTGAACCCTGACCTCACTAGCCTGTGTATGGCACCACAGAAGGGTCGAGTTAAGGTGACGGAGGAGCAGTATGAGTTGTACTGTGAAATTGGAAGCACGTTTCAGTTGTGTAAAATCTGTACAGAAAGAGACAAGGACACTCGCATCCAGCCCTGTGGACATCTTCTGTGCAGACCCTGCCTCACCGGCTGGCAGAAATCAGATGGGCACACCTGCCCTTACTGTCGCTGTGACATCAGAGGGACAGAGTCCATCCTCGTCGAGCCGTATCTGCCCGTAACTGGAAGAAGAGAAGACGAGGAAGACGAGGATGAAGACCATGAAGATGTAGAAATAGTCATGAAGGCACTGGCTGCTATGAAAAGGgCATCTCTGGATGAGTACCAGGTCCCCAGGTCCGGTTTAGGACCTCCTCCCCTCCCCCCAAAACACAACAACTCCGCCCTCTCCCCCTGCCCATCGCCAAGACCCCGCATGAGACCTTCCACCAGAGGAACACAGACTAAAGGTCACAGCGGCTCAACACATTCAGAAAATCTACTAAATCAAACAGAAGCTTCCTTCAGCAGCAGagACGATGCTTTTTCTGACCAAGTATCATCCTTGCAATCAGGCAAAAACACTGGAGTGCTGTGGGCAGGACCTGCAAATTCagcaaaaaacaagaaagaaagaaaacgggAGGAGCAAAGTATGTATGATAGAAGAATCTCAGAGACACAGCTGCCAACAGGAAGACACAGTCGAAAGGACTTGGACAGACACAGCTTATCCTGACGGTGCTCCACAGATCCGCAGGATGCCATTATAGACAGTAATATAAGGATagattacagtgtttttttctgcatataGTTTGTTCTAGAGAGTTCATCGGCCTTTACAACCACATAGAAGGTCTATCAAAGTGTACTGAAACCATGTTTAAGTGGTTAACCTAACTGTCTTAAGTTTTTAGATTCTACCTCACTCATGCTGAAGGCTCCTTTACACATCCTTTACATATATCAATGAATATGCCGTTTCACATGTTGTGACCATCACTGCCTAAATACTTCTACATGTAATGCTTTATGCTGACATGGATATTTAGGAATGCATCTATTTAAAAGCTGAGTTGAAATTAACAGGTCATGATAATGTACTTGCTGCAAAGGGTCACAGTCAgctgttaaaaaaacagcagttagGTTAATTTTCTTACTGAGTTCCTACTTCGTCATGTTCATATATTCGTCTGTATCTGCAAGCTTTTAGAAAACACGCACAAATACGGACAAATTAAACTCTTTCTGTATTTGTACTTAACTTTAAGCATAAATGAGCAGTAAGAATAGAAATACTGTGTTCTGCTGTATACTGAAGAATCCAGAATATGACAGTCTTACTTGTTTTTAGGCATAAACATAGACCACACATACAATTAAATCATACATTACAGGCCAGACAGCTTAAACAGAAAGTCAATaa

Function

GO:

id name namespace
GO:0023051 regulation of signaling biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001784 phosphotyrosine residue binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122031 lncRNA upstream 7375 14221013 ~ 14222270 (+) True G90719
TU121998 lncRNA upstream 40220 14186614 ~ 14189425 (+) True G90692
TU121974 lncRNA upstream 224197 14005234 ~ 14005448 (+) True G90678
TU121936 lncRNA upstream 640401 13559581 ~ 13589244 (+) True G90645
TU121916 lncRNA upstream 726881 13502292 ~ 13502764 (+) True G90625
TU122160 lncRNA downstream 109294 14356600 ~ 14357694 (+) True G90818
TU122179 lncRNA downstream 266145 14513451 ~ 14514175 (+) True G90836
TU122191 lncRNA downstream 399026 14646332 ~ 14652282 (+) True LOC103029466
TU122280 lncRNA downstream 415351 14662657 ~ 14700071 (+) True LOC103045856
TU122282 lncRNA downstream 418424 14665730 ~ 14773367 (+) False LOC103045856
XM_007249576.3 mRNA upstream 82912 14136719 ~ 14146733 (+) True LOC103045349
XM_007249577.3 mRNA upstream 93669 14120999 ~ 14135976 (+) True LOC103045642
XM_007249578.3 mRNA upstream 93669 14120999 ~ 14135976 (+) False LOC103045642
XM_007249579.3 mRNA upstream 109982 14110525 ~ 14119663 (+) True LOC103046158
XM_022673614.1 mRNA downstream 4697 14252003 ~ 14256689 (+) True LOC103043509
XM_007249568.3 mRNA downstream 19411 14266717 ~ 14270832 (+) True LOC103042587
XM_007249567.3 mRNA downstream 24689 14271995 ~ 14274687 (+) True eif1b
XM_007249564.3 mRNA downstream 68779 14316085 ~ 14330564 (+) False ccdc129
XM_022673619.1 mRNA downstream 68781 14316087 ~ 14330564 (+) False ccdc129
TU121747 other upstream 1281395 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 2072783 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 2091007 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3322473 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 3540825 10688266 ~ 10688820 (+) True G89806
TU122125 other downstream 24758 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 912909 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 1028947 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 1034203 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 2147908 16395214 ~ 16419380 (+) False trim71

Expression Profile