RNA id: XM_007249576.3


Basic Information

Item Value
RNA id XM_007249576.3
length 7496
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103045349
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 14136719 ~ 14146733 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTGAATTGGAGCCTGAAAAGACACTTTATAAAGACTGTGGGGTTTAGTTTTGGATGATACTCTTCAGAGTTGTGGATGTGAGAACAAGTCCTCTGGTTTGCAACAAGTGAAGGCTGGTTTTGAGGTTTTGACTTTAGTACAGCAAATTTACTTGGAAAAGATGGAAGTAGATGTTACGCTTTGACCTATCCATCACTGGCTTAGTGAGGGGACCAACATGGATGAAAACACAGATATAGCTGTAGTCGGCATCGGCTGTAACTTCCCAGGAGGTGAGGGCCTTGAGAACTTCTGGACAGTTCTGGTTAATGGGAGAAATTGTGCTGAGGAGATTCCAGAGGAGAGATTTGACTTATCACATTGGTATGATCCTAATGACAAGGTTCTGGGGAAAACACAGACTACTAAAGCTGCTTTCATAGATGGGTTCAATGAGTTTGATCACAAGTTTTTCGGCATCTCTGAGGACGAGGCTAACTTCATGGATCCTCAGCAGAAACTCCTTCTGCACTGCTCATATAGAGCACTGGAGGATTCTGGGATTCCCATGGAGAAAGTCAGTGGATCCAGAACTGGAGTTTACATAGggCTCATGAACAGAGACTATGAAACACTGCTGAATAACAGTCCGAGCACAATAACCCACTTTAATGGCACAGGAACAGCTATGAGTATAGCTGCCAACAGGATCTCATATACCTTCAACCTCACTGGGCCTTCCTTTGCCATAGACAGTGCCTGCTCATCCTCACTGGTTGCATTGCATTCTGCTTGTCAGGCAATCAGACAAGgtgACTGTGAGATGGCTCTCTGTGGAGGTGTAAGCTGCATTCTTGAGCCACGGGTCTTTGTTGCTCTGAGCAAAGCAAAAATGATCTCACCTGGAGGCACCAGTAAACCATTCTCCAACACAGCAGATGGTTATGGTAGAGGAGAAGGCTGTGGTATACTGTTATTAAAGCCTCTGAAAAAAgCTCTTCATGATGCTGATCACATCTGGGGAATAATTTGCAAAACTGCGGTGAACCAAGATGGTCATGCTGTTACACCAATGACAAGGCCATCTATAGTCCAGCAGGAGGAGCTGCTCCACAGAATCTACTCTGCAGAGTCCTATCGGTCTGAAGTCCAGTACATAGAAGCTCATGGGACTGGCACTCCAGTGGGAGATCCAACAGAAGCAGGTAGCATTTCCAATATCATTGCCAAAGCAAGACCTGCAGGTTTAGGGCCGCTCTGTATCGGCTCCGTTAAGAGTAACATTGGGCACACAGAATCTGCAGCCGGAGTAGCAGGACTCATTAAGGTTCTCCTGATGATGAAACATGAAACTATTGTTCCATCAGTTTTCTACTCAGAGGAAACCTCTAGCATTGACTGTCAAGCTCTCAATCTTAGAATTCCTAGCAAATCTGAGAAATGGCACTGTACTGGTTCTCTGGGCAGGGTGGCGGGAATAAATAGCTTTGGATTTGGTGGCACTAATGCACATGCCATCATTAGGGAAAATACACATGCTACAGCCTTTGGTTTGAACACTCAAGGGAATTCAAGGAAACTGTTTCCATTGTCTGCTGCCACAAGTAAGTCTCTTGAAATGTGCATAGCTGACACGTATCAAAGGATTAGCACAGACAGCAGAACTGACATAAGAAGTCTTTTGTATACATCAGCATGCAAGAGAAGTCACGCAAAACACAAGTACAGGAAAGTATTTGTTACAACATCTCTTTCAGATCTAGAGGAACAGCTTAAATCGAATCTGAACAACGAAATCTCTCCGACAAAACCAGACCTCAGggtagtttttgtgttttgcggAAATGGCGTCACTTACAGAGGCATGTGCAAGCAGCTGCTGAGAGAAGAGCCTATTTTTCAAGAAAAAGTCATGGAGATTGAAAACTACTTTCAGAATTACAGAGGAATGAGCATATCACAAAAGATCAACAGCTTTGACAATGATGATTTCTCAAAACCAGAAATTGTACAGCCTCTTCTCTTCGCTACCCAGGTTGCCATTGCTAGTCTGCTAAAGCACTGGGGTATTAGGCCCTCTGCTGTTCTTGGGCATTCGATGGGAGAGGTTGCTGCTGCCCATTGCGCTGGTCTGTTGTCTCTTGAGGATGCAGTGAAGGTCATCTACTATCGGAGTGTCCTACAAAACAAAGTCACTGGAGGAAAAATGCTGGTGGTTGGCAATATAGCAGTGCCAGACATTCTGAAACTTCTTCCAGCTTACACAGGCAAGGTGTGCCTAGCAGCTGTGAACAGTCCAGTGTCATGTGTGCTATCTGGTGAGACAGATGCAGTTGAAAGTGTGTACCAATTGTTGAGAACCTCACTTAAGGGCAAGAATCTATTCTTGCATATTTTGGAGGTCCCTGCTGCCTACCATAGCCATATGATGGATCCAATACTGAGTCAAATTAAAGACCGCATAGGGTCTTTAGATCAACATGAAATGGAGTGTGAGTTGTTCTCCACAGTAACTGGAAAGGCTTGCTGTCCTGGAGACTTTGTAACTGCCGATTACTGGGCAAGAAATATCCGAAACCCAGTTGCATTTGAGAGTGCTGTGAAAGCTGTGGCAGACAATAAAAAGAATGTAGTCTTTGTTGAGATTGGTCCAAGAAGGGCTCTGCAGAGGAACATTGTGGAAACTCTGGGAAATGACACActggtgctttcctcagtcCAACCAGACAAAGATCTTGATACACTGCTTGCTGCTGTGTCTAGACTCTTTGAGCTGGGAGTCTGTGTAGACTGGGATCAGTTCTACAGTGGCTTTAAATCACCACCAACTTCTTACCCTAAGTATCAGTTTGACTGCCTGAGGAAAGAGGTATATTTTGAGGAAGTAAGACAAGGTAATGAGGTAATGGCTCGCTGTTCTCATCCACTAATATGTCCCATTAGTAAGCGTAACAACAGAATTATCAAATGCAATCTGTCAGTGGAAACCACTCCCTATGTTTGGGAGCATAAAAACAATGGCACAGTCATCGCCCCAGGTGCCTTGTATGTTGAAATGGCTTTTGCTTCACTACTTGAAACTGTTGTCCCAAAGATGCCTCTTTCCTCACTTCAGCTTACTATCAACTTCCAGAACTTGCTTGTTCTTAGTAAGAGTTCGCATCTTCTGAACGTGCAACTTGAGTCATTTGAGGATAAGGCTCAATTTCGGATACAGTCCTCTGTATCTACAGTGCATGCATCAGGAGCCATCACGTACACAAGAGGACCAGCAGTCTTTGAGCACCAATCCATTGTCTTGGACATGGTTTTGAAACGATGTTCATCAATTAttgatggacaacaggtctATGCCACTCTCAAGCAGGCAGGATTTGAGTATGGATCCACCTTTCGACAGCTGAATGAAATCCACTATGGGGAGGAATTCAAGGAAGCAGTGGCCCCTGTCAAAATCCCAGTTGAATTGCTTGGTCAGCTATATGAGCACTGCCTGCATCCAGTTGTATTGGACTATTTTCTGCAGGTGACCTCTGTTTTAGGCTTCAGTAACAGCACTGTTCGTCGTGGATTTCCCTCTGCAATTGGCAGCATGGTAATATCTGCCCCTCTTCGTGAGGAAGTGATCATCTATATGAGGCTTACTCAAGAGACGCCAGAATATTTTGAGGTGTGTGGTTGTTTCACAGATACAACTGGACAGATCTTGGTTGAACTTAAGCACGTCAGAATGACACTTTTAGAAGATAGTATGAATATGACTGATTCATATTTCTTTCATAATGAGAGACTTGCTGTCCAAGCCAGTTCCAACATTTGTAGCAAGCCAAAAGCTGTAGTCTTTGAGGACACATTAGGTATTGCAAGTGCTTTGAAGCCATACCTACACCCTTCGTCAGTATTTTTCTCTCCTGCTGATGCAAACTGGTCAACTTCTCCAGCAGAGCTAGAGCAAGTTGCGCAAAATGGAGCAGAGACAATTTTGTTTGTCTGCAGCTTTCAAAATCTCAGCCATCTAAAACCTCAGTCAGTTCTCGAGCACTTGGTGGATATCTGTGAGCTTTATCGTCAAGTTGTTTTGGTCATGAGAAAATGCAAGCATTTGCTCACTATTCACGTTGTAACGTACCGATCATCTGAAAACACTGTTGATCACATTAGTCCTGGATTTGTGCTATCTGGTCTGACCAGGGCCTGTGCTGCTGAGTTGTCGGAAATCTCCTTTCAACTCATTGACCTTGGCACAGTGTCAACTGAGGACATAGAGGCATTAGTTTACGTGATCTGCTCCTATAAAAGCAATGAGTACCCAGAAGTTATGATAAGGAAAGGCCAGGTTTACTCAACAGTGATAACACGTACACCAATTAACACAACAGCACAATGCAAGGGCTCTTTACTGTCAGACTGCTTCACCTTACAGACAGTCAGTCCTTATGCAATGTCTTGTTTGTCAGCCATACCCAATGAGCATGAACCCAGTGTAGTAAATCTCACTGATGGAAAATCTGTGGAGGTCCAGCTCTGTAAAATCTGTGTGCACTCCTCAGACTACTTTCCAGTTAGCATATCTGACCTAAAATTTGGTCGGACAATATACTGGCATGAGCTGACTTTTCAGAACCACCAACTTTTAGCTCTTGACTTCAGTGGTGTTGTCACAGCTGTGGGGAAAGATGTTAGAAACCTGAGAGTGGGGGACCATGTTGCTTCCTGTTACCCTACAGTAGCAACTTCGAGCGTAGTCCTACCAGAGAATGCTTGctacaaaacaaagaaactccCTTTTCTGAAAGATGTTCCCTGTGTTTCTTACATTATACTTGCTTGGGAGATCTTGAACAGTGCTCTACCAATGGCCAAGCCAAAGAAGATATTGGCCATTTGCTCCACAGTTCCAGAATCAGCACTGATGAAGGTGTTGGCTTTCACGGCAAACAAGTCTGGATGGAATGTTGTGATAGAGCCTGACTTGGCTGGACTCATCCGAAATATGGACCAGTGTCCAGTTTGTGTCCTGATTCCTCCTTTTGATCAATCATGGTTGGCAGAGTTAGGCAGTGTTGCCAGTACAAATCATATTTATGTTGTTTCTGACAACAAGGACTCGATATCTTGCCCATCAAGCATTCTTCAGAATGATAATGAGAGTGTGTGCTTCCACTATCCTAAGTTGGGTAACATTTTCCAGAAGTCTCATCTCAGGAGACAGAATGCTTGCATATATAGATGGCTAAAAATGATGACCTTGGATAAGTCAATCCTATCCTTACCCAGCAACATTTTTCAGATCACCCAAGCTGAAGCCACGAGTCACCACACTCAGAATGCTGGGTCTTATTTCAGCAATAAAACTGTGCCCTTGATTGTTTTGAGTAACAATGGGTCCAATGCTGGCATTTCTCATATTGACTTACTACCAAAAACAAAGCATCTCTTCACACAAAAAGCTGTGTACATAGTTTCAGGTGGTTTGTCAGGTTTAGGATTTGAAACAGTCAAGTTCATTGCACACTCGGGTGGTTGTTGCATCGCTACACTCTCGAGGAATGCTGCAAATGAGGAAACAAAGCTGCAGATCAGCAGGCTTACTAAAAGATATGGAGTAAAAATCCTCACTCTTCAGTGTGACGTGTCTGTGTCAGAACAGGTATTGGAAGCAATCACTATAATTGGACACAAGTTCCCTTCTTGTCCAATAAAAGGAGTCTTCCACAGTGCCGCCGTACTCCATGATGGGTTACTTGAAACCCTTGATAAGTCAATCTTCGAAAAAGTCTTGCGCCCTAAAGTGAATGGTGCATTGAATCTTCACTACGCCACGGTGAACAGCAAAGTCGATTACTTTGTGTGCTACTCATCCATCTCCTCTTTCATTGGCAATGCTTCTCAGGCTAATTACGCAGCTGCCAACTCATTTCTAGACACTCTGTGTCACTACCGACGTAATATCGGACTTGCTGGACAGTCCATCAACTGGGGGCCTCTCAAACTGGGTCTTCTGCTAAACAAAGGGGACTTTCAAACTTTCCTAGAGTCCAAAGGGTTAATGATCATGGAAGTTCCAGAAATTCATGAAGCTCTGAAGCACTGTTTGTTGGAGAACAGGCCTCAGCAGGTTGTGTGCAAATTCAACTTCAGAAACTTGAGGAACAATGTTCTTTCTCAAAATGCTTCTCTAAAAGGGCGACTAACCGCTTTAGTTGAGAAAGAGCTTGAAAGCAAACTAGTAAATGAGCCCAGGAAGAATCTGCAGTCTTCATTTGATGAATATATAAGATGCATGCTTAGTAACATTTGCAATGTTGATGCAGATGAACTTGAAGATGAGACAGTCCTTGCTACAGTGGGAATTGATTCAATGATGGCCATGACAATGCAGAATCGGATGTTTCAGGAGACTGGAGTAAACATTCCTCTTGTTGCTTTACTTGACCCTAACAACACTGTGTCATCACTGATTAGCCTTTTCACAGAAAGCAATAATGGATGTAATGATGTATATCTTTAAAAGGTATATACAATGTATATAACATTGGAGAAAGAATAACGCCACAGCAAGTAATTAGCTTTATAGTCTTCCCTGCCTCTCCCTTGATTTCCTCTCCTGTGCACAAACACTAATACCACCTGTTGCAGATTGGGCTAGAATGGTGCTGTTTCTCTGTCTGAGCAAATTTCTTTGTTTCCAAGTTGACAAAGCCAGGGCTGAGTATgaacagacttttttttgtgcGCAAACAGATCAGAGCCAGCAAACAGTGGGGAAACATTTACtgaattttgttattttgttgattttgtgaTACTGATATTCAGATTAGTTTGATATCCGTGATATTTATATGATTAAAGCCAcagttattgtttttgtaatccAACATATATGTCTAATTATTACTATTTCTAATTAAATCATATGCTTAAATGCTTGgatgttttttatatagttaACAACTTTTATTTAGTTAATCATATTGATGAAATCATAAAGAATGAAGTATATGTTTAGGGTTTTTATTTGTTGGCAATAGCTGTGTCTTATGTGTTAAAACGCTCTGTTGTTTGTTTAATGTTAAGAATTTTGCCAAACCCTGCTGTATAAGAAACTAGTACAGTTCTGTCTGTATGTGGCAACACAGAGGGGTCAAAGTGCAGTTTCCTGTTATACACGTCTTGAATGGCTGTACCAAACTCACAAATCCCCCTGAGGTGCTTATGCAAATATGAAGCATGTGCAGCGGAAGGCAGATTTTAACCACAGTGCAACCAAATGCAAAAAGGAACGCAAGAGGTGAAAATCTGCTAATCCTTACTCAGACTGTTTTTTTGAAGAAAGACCATGAGTCTTGCTTCAATCAGGAATGTACCAAGAATGTGATTTGCTAGACTGAAATGTGGTAAAAACACAATGTGATGTTTGGGAGGAGCTGATATTACGTACCTTTTAAGTACCTTTTTATACACATCTGATTTTTACTGTGATGTAATGTATGCTTATTCAATGGTCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121974 lncRNA upstream 131271 14005234 ~ 14005448 (+) True G90678
TU121936 lncRNA upstream 547475 13559581 ~ 13589244 (+) True G90645
TU121916 lncRNA upstream 633955 13502292 ~ 13502764 (+) True G90625
TU121918 lncRNA upstream 652121 13484138 ~ 13484598 (+) True G90627
TU121913 lncRNA upstream 682218 13454169 ~ 13454501 (+) True G90622
TU121998 lncRNA downstream 39881 14186614 ~ 14189425 (+) True G90692
TU122031 lncRNA downstream 74280 14221013 ~ 14222270 (+) True G90719
TU122160 lncRNA downstream 209867 14356600 ~ 14357694 (+) True G90818
TU122179 lncRNA downstream 366718 14513451 ~ 14514175 (+) True G90836
TU122191 lncRNA downstream 499599 14646332 ~ 14652282 (+) True LOC103029466
XM_007249577.3 mRNA upstream 743 14120999 ~ 14135976 (+) True LOC103045642
XM_007249578.3 mRNA upstream 743 14120999 ~ 14135976 (+) False LOC103045642
XM_007249579.3 mRNA upstream 17056 14110525 ~ 14119663 (+) True LOC103046158
XM_007249580.3 mRNA upstream 17056 14110528 ~ 14119663 (+) False LOC103046158
XM_022673605.1 mRNA upstream 80421 14036972 ~ 14056298 (+) True sim1
XM_022673612.1 mRNA downstream 80894 14227627 ~ 14247306 (+) False LOC103042889
XM_007249569.3 mRNA downstream 82911 14229644 ~ 14247306 (+) True LOC103042889
XM_022673613.1 mRNA downstream 82912 14229645 ~ 14247306 (+) False LOC103042889
XM_022673614.1 mRNA downstream 105270 14252003 ~ 14256689 (+) True LOC103043509
XM_007249568.3 mRNA downstream 119984 14266717 ~ 14270832 (+) True LOC103042587
TU121747 other upstream 1188469 12944828 ~ 12948250 (+) True npy
TU121367 other upstream 1979857 12154897 ~ 12156862 (+) True G90199
TU121370 other upstream 1998081 12135574 ~ 12138638 (+) False LOC103025787
TU120940 other upstream 3229547 10904644 ~ 10907172 (+) False LOC111193328
TU120819 other upstream 3447899 10688266 ~ 10688820 (+) True G89806
TU122125 other downstream 125331 14272064 ~ 14274698 (+) False eif1b
TU122457 other downstream 1013482 15160215 ~ 15216508 (+) True alg14
TU122479 other downstream 1129520 15276253 ~ 15279164 (+) False LOC103025288
TU122481 other downstream 1134776 15281509 ~ 15283055 (+) False LOC103025288
XR_002650442.1 other downstream 2248481 16395214 ~ 16419380 (+) False trim71

Expression Profile