RNA id: XM_007254549.3


Basic Information

Item Value
RNA id XM_007254549.3
length 3328
RNA type mRNA
GC content 0.57
exon number 6
gene id LOC103030591
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12714488 ~ 12756183 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGATCATTTTTGTCCACCAACGATATGAAACACAGCGCGCGCGCAGCTGAACGTGCACACAGCTTTGCGTCTACCTGAGGACCACGTCTGTCCGCTCgcgtgcagagagagagagcactgctCCTGGGTTGGTTGGAGGGctggttgttttttgtttgcgtgcatgcgtgtgtgtgtttgtgtgtgacgCTCGCGCACCCGCCCGCCTGACCGCCTCTCGTGCGCGTCTCTCGTTCCAAGTTGCGCGTGCACGTGCGCCACAGCTTCGCCAAGGTGTGCGAAGGCGCCTTCGCTGTTCAGCACCGCGGACAGCAGCAACTCGCGCCCGTGCACCTGCGCTCACCTGCGCTCGCGGACGGCTGCAGGTGCGAACTGAGAACTGAGAACTGAGAACTCCACTGGCGCGCGTGTGCATGCgtatgtgtgtttctgtctggTTGCACGCGAAGACAAGTTTGCTGATCCAATGATCCGGACTGTCGGAAGTCTTTACAGGTCCTCAACAGCCTAACAAGATGCAACAACATTCAAATAACTCCTCAAAAGTCCATCAAACCCAACTCATCTAAATCTGCAGTTTCTATAGAGGGCAATCCGACCATTTCCTGAGCCGCACCATGGCTGGGCTTCCAGTAGGGATTCCCCAGCAGAGCATCCCTTGTCCATGGCTCCCCCTCGTGGCCTTTCTGCTGCTAATGCTCCCCCAGGCCCAGACCAGTCCCAGGTACCTCCCTGCGCTGCCCGGCACCAAGCGTGAGATTGTGATGGACGGCGACCTGGTGATAGGTGGCTTGTTCCCCGTGCACGAGAAAGGCGAGGGGACGCAGGACTGCGGTAAGATCAACGAGCAGCGCGGGATCCAGCGTCTGGAGGCCATGCTGCTGGCCCTGGATGAGATCAACCAAGATAACCGCATCTTACCAGGCTTCAGGCTGGGGGCGCACATCCTGGACACCTGCTCCAAGGACACGTACGCACTGGAGCAGTCACTGGAGTTCGTCCGGGCGTCGCTTACCAAAGTGCACCAGCCTGGCTTCATCTGCCCTGACGGCTCCAACCCCGTTCCAGACGAGGCACCACTGGCTATATCCGGAGTGATCGGAGGCTCGTATAGTGATGTTTCCATACAGGTTGCCAACCTTCTGCGCCTCTTCCAGATCCCACAGATCAGCTATGCCTCTACTAGTGCCAAACTAAGCGACAAATCCCGCTATGACTACTTTGCCCGAACTGTTCCCCCAGACTTCTACCAGGCCAAAGCCATGGCTGAGATCCTGCGCTACTTCAACTGGACCTATGTGTCCACGGTGGCCTCCGAGGGCGACTATGGCGAGACAGGCATTGACGCCTTCCAGCAAGAGGCGAGGGTTCGCCAGATCTGCATCGCTACGTCAGTAAAAGTCAGCCGTTCCATGAACCGGGTGAACTATGAAACGGTGATCCGCTCCCTGCAACAAAAGGCCAACGCCAAAGTGGTCATCCTCTTCACCCGCAGTGAGGATGCCCGTGAGCTGCTGGTGGCGGCGGCACGAATGAACGTCACCTTCATCTGGGTTGCCAGCGATGGCTGGGGAGCGCAGGAAAGTGTGGTGCACGGGAGCGAGAAGGCGGCTAACGGGGCCTTCACCATCGAGTTGGCCTCCTACTCCATCCGCGAATTCGAGGACTACTTCACCAAGCTCACCCCAGAGCTCAACACCAGGAATCCCTGGTTCAGGGAATTCTGGGAGCACAAGTTTGGATGTCGGCTTCATGAGCCGGGCTGTGCCAGTCACAGCCTGAGGGACGGTTCCTTCAAGCAGGAGTCTAAGATCATGTTCGTCATGAATGCCGTCTACGCCATGGCCCATGCACTGCATAACATGCGGCAGGCAGTGTGCCCCAACACCACCCGTGTGTGTGAGGCTATGAAACCAGGAAACGGCAAGAGGTTCTACCGCGAGTTTATCCTTAAGACCAAGTTTGATGCTCCATTCAGACCTGCGGAAACGGAGAACGTTGTACGCTTCACCTCTCTGGGGGACAGCCTTGGACGCTACAACATCTTCCACTACGGCCAAGAGAACGGAAGGTACGTCTACAAGAAGGTGGGCTACTGGTCCCAAGGCTTAGTCCTTAACACCAGTCTGGTGCCCTGGCCTGGAGGGGCAATTCCCACCTCCCAGTGCAGTGACCCCTGCCAACCCAATGAGGCCAAGAGCATGCAACCTGGGGATGTTTGCTGCTGGATCTGCATCCCTTGCCAGGCCCACCAGTTCCTTCTTGATGAGTTCACTTGTGAGGACTGTGGCTTTGGGGAGTGGCCTTTGACCAACCTCACTGGCTGCTATGAACTTCCTGAAGAGTACATTCACTGGTCCGATGCATGGGCTGTTGGACCCGTGACCATTGCTTGTCTGGGAATGCTGTGCACTATGGCAGTCGCTGGGGTTTTCCTGCGCAACAACGACACTCCAGTAGTGAAGGCTAGTGGACGTGAGCTGTCTTACATCCTGTTGTTTGGAGTCCTCCTCTGCTACGCCATGACCTTCATCTACATTGCCAAGCCGTCTGCAGTGGTTTGCGCCCTACGACGTCTCGGCTTGGGTACATCCTTTGCTGTCTGTTATTCCGCCTTGCTCACCAAGACCAATCGGATCGCTAGGATATTCGGCGGGGCTCGGGACAGCGCCCAGCGGCCTCGCTTCATCAGCCCTGCATCCCAGATGGCGATCTGTGCTGTGTTGATCTCTGCTCAGCTTCTAGTGGCACTGGTGTGGCTCCTGGTGGAGGCTCCCGGAGTCCGCAAGGAACTGAGTCCCGAGCGGCGAGATGTGGTGACTCTTAAGTGCAACAGTCTGGACTCCAGCATGCTGGTGTCGCTCACCTACAACTGCATTCTCATCATCCTGTGCACCTTCTACGCCTTCAAGACCAGGAAGTGCCCTGAGAACTTCAACGAGGCCAAGTTCATTGGGTTCACGATGTACACAACCTGCATCATCTGGTTGGCCTTCCAGCCCATCTTCTACGTCACGGCCAGTGATTACAGGGTTCAGACCACCACCATGTGTATCTCGGTCAGTCTGAGTGGCTCGGTGGTGCTGGGCTGTCTCTTTGCGCCCAAAATCCACATTATTCTGTTCCAGCCGCAGAAGAACGTGACCTCACTGAGGAAGAACGACAACCGCTTCTCCACGGCCATCACGGCCCCCAGCTCCACCTACTCACAGGGTAGCTAACCTCTTCCTCCAACTCTTCCTCCGCCACTGTAGTTCCTACCGTGTGCAACGGACGAGAGGTAGTGGACTCTACGACGTCGTCATTATAAGGGATAAAAATGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256641 lncRNA downstream 622 12651665 ~ 12714032 (-) True LOC111195455
TU256669 lncRNA downstream 3641 12709673 ~ 12711013 (-) True G189349
TU256666 lncRNA downstream 9942 12704268 ~ 12704712 (-) True G189348
TU256663 lncRNA downstream 55890 12653060 ~ 12658764 (-) True G189345
TU256661 lncRNA downstream 63564 12649311 ~ 12651090 (-) True G189344
TU256673 lncRNA upstream 11828 12768010 ~ 12768711 (-) True G189352
TU256699 lncRNA upstream 123763 12879945 ~ 12880344 (-) True G189376
TU256703 lncRNA upstream 134652 12890834 ~ 12891269 (-) True G189380
TU256704 lncRNA upstream 138681 12894863 ~ 12896608 (-) True G189381
TU256708 lncRNA upstream 146755 12902937 ~ 12903160 (-) True G189385
XM_015607188.2 mRNA downstream 27536 12673366 ~ 12687118 (-) True gpr61
XM_007254543.3 mRNA downstream 48435 12662572 ~ 12666219 (-) True LOC103029205
XM_022682860.1 mRNA downstream 100785 12612611 ~ 12613869 (-) False LOC111195455
XM_022682859.1 mRNA downstream 100794 12612611 ~ 12613860 (-) False LOC111195455
XM_022682392.1 mRNA downstream 102637 12594526 ~ 12612017 (-) True sypl2
XM_022682830.1 mRNA upstream 14553 12770735 ~ 12785185 (-) True LOC111195440
XM_022682395.1 mRNA upstream 64693 12820875 ~ 12854393 (-) False ippk
XM_022682394.1 mRNA upstream 64693 12820875 ~ 12854392 (-) True ippk
XM_007229612.2 mRNA upstream 124640 12880822 ~ 12884782 (-) True LOC103025083
XM_007229619.3 mRNA upstream 149148 12905330 ~ 12922980 (-) True shisa5
TU256647 other downstream 95088 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 369272 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 670361 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1723260 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2759847 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 306753 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2562462 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2675485 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3646609 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 4077668 16833850 ~ 16869461 (-) False cass4

Expression Profile