RNA id: XM_015607188.2


Basic Information

Item Value
RNA id XM_015607188.2
length 3040
RNA type mRNA
GC content 0.45
exon number 3
gene id gpr61
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12673366 ~ 12687118 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aCTCTATCATCAGTAGTGGAGCATCCCTGCTGTGGTTCACCTGCTGCCTCCAGCCCACCTGCTCTTCATTGGTCAGTGTGATAAACGCTGTGCTAAACGGTTGCACCACAGAGCCTTCACACAGATCAGTGTTTGGAACCAAACACCAAATCTCAGCAGGACAGAGCCGGactcccaaacacacacatctggCTATAATACTGCTCACACTGCGAGAGGAGATCTGGGACTTCAACTCCACCTGCACACTGGACACCAGAGCTGACCTGAGGAATCACCACACCCACCCCTGGTGGAGGATGGAGGAACCTTCGACTCTGACTCCCACTACGTGTTTATGAGCAGTGAAGATGGAAGCATCCGGATTATCTCAAAGCCACGACCTCAACGAAACAGAGCTCAACCACACGCTGGACCATGGCCACGGCCCCCACGTGCACCTGCCTCCCAGCATGCAGCTGGGCACCATGTCCAACCCTCAGTCGCGTCTGCGGGACCTGACCGGGCTGGTTGCGATGGTGACGCTAAATGCCATTGCCCTCTTCGCCAACGCGGCGGTGCTGGCCGTGGTGTTAAAGGCGCCTCACCTGAGAAAGTTTGGCTTCGTGGGCCACCTGTGTGCAGTGGACCTGCTGTGCGCCGCCCTACTCATGCCGCTGGCCATCGTGTGCGGCTCGCCGATCTTCGCGGGCGTCATTTTCTCTGTCCTGGAGTGCCGCCTCTACGTCTTCCTCAACGCCTTCCTCATCTCGGCCTCAATCTTCACCGTAACGGTCATCAGTGTGGAACGTTACTACTACATTGTGCACCCCATGCGCTATGAGGCCAAGATGACCCCAAGGGTGGCTGCGATTGCCATGGTGTTGGTGTGGGTGGCAGCTGCCATCCTCGGGTTGGCCACCGTCTTTGGCTGGCCAGACTATGGTCGCAGGAGTTCCATCGCTGCTGTTCACTGCTCGCTGCACTGGAGCCACAGTGGTCACCGGAAGGTTTTTTCCATCCTGTTCTGCGTGGTCTGCTTCTGCGTGCCAGCTGCTATCATCCTCGCTGTCTATGGAAACGTGTACAAGGTAGCTCATACAGCTGCCAGGCAGAGAGGGCCCCTCCCCAGCTGGGTCATCGCAACGCCCCGTCCCAAAAGACGATCTGACTCCGTCAACAGCCagaccaccatcatcaccaccagcTCAAGCGCCAGGAGGGGTGTCCACGCCCACCGCCGCCCCAGGAGGACACTGGTGGGGGGTAAAGCAGCCCTCACCCTGGCCGTCATCGTGGGGCAGTTTGTGCTCTGCTGGCTCCCCTATTTCGCCTTCCACCTGCACCTGTCCCTGGGCTTTTCCCACAGCACCTCAGACGAGGCCGAGGGTCCGGTGACCTGGCTGGCGTACTCCTCCTTTGCCGCCAATCCCTTTTTCTACGGTTTGCTGAACCGTCAGATCCGGGAGGAGCTGTGTAAAATTATATGCTGCTGCCGTTCTCCGGGCAGACCGGTGCGACCCCCGGCAGCCTCCGGACACGACCCCTCAGCTCACGAGGACTTTCTGCACTTCCTAAATCGAAGCACCTCTGCAGACGTGACCAGGAGCAGTTTCCACACGACGACTCCCAGGACCACGCTGGACCAAACCAGCTTCAGGATACCAGGACAAATCCCAGAGGAGGTCacttaaactgtgattaaactgatTCAAATTAAAAGTGTTCACACTGGATTCAGAACTAAAGAGTTCAAATCAGGTTTGAATGAGAATGACACTCTGCTAATATCGTCAAACTTGTTTTTAGGTTAGACCTTTGAAGAGGTCAGGCTGGGATTACAATGAGTCACATCTGATGTGTTCACACTGGAACCAGATCTGAAGTGTTTCGATCtgtattgtataaaaaaatcaaaatgttaaaattaggtTCAAATGTGAAGCATTCCAATCCTAATAAAATCTGAGGTGTTTAGATTAAAGtctaaatcacattttaacttcaatctaaatattttctttttaaaataaagaaataaagaagaatggacttgtttttaaaacaagTCCATTATTTTAATGTGGTTATAAAGTCatgcttgataaaaaaaaatcttggctTTTTTCCAGAGAAATCCAGTGAATGTGAAAAGAATTTGTTGGTTCATACTTGAAGAAAAGATATATAAACTTGTGTTGACcttatatttatgatatttataaTCTTCTTCTGGAACAAAAAGGGAAAAGAAGaaatttcaaaaaaattttaTTACATGAAGAATTTTCTCCATTGGATCAGTCGTGTCTATAAATACATTAGAGTGTAACAACTTGTTAAAATAATAGAGAAAATCCTGAATTTTCCCAAAGACCTTTTGTAGAAATGGTTCAACCTGGATCTaaaatgttctattttctaattttctagtAAAGTTTTGAAGTTATTAAGACAACAGGCATTCATCTGATATCTGAAAAATACTTCAGATATCAGAAAGGCAGTTTAAACACAAGCTTAAATACTCAgggcttttttttcaatatcagGAGTAACAGCTTGAGGGAAAAATGACTTCTCCTCTCCAAAAAGTGgtcaaattacatttattttgttattaatttaagTTATCCAATCTGGATCGCTCAAGTTAAATTCTCAAATGTTCTAATCAGATTTAGGTCTGACTGTAACTCTGTGTTCAGAATCTGTAATTATGAAACTGGGttcagttttaaaatgttaattgggCTAAAATTTGGGTTTAAATCTGTAACAAATGCAATTGTTTAAATCTGGTTTCAATCTGAAATGTTTaaactggtttcaaaactaaaaaaatattaatcaaaataaaGTCCAAAGTGTTCAAATCAGGTTTCAATCTGAAATGTTTaaactggtttcaaaactaaaaaaatattaatcaaaataaaGTCCAAAGTGTTCAAATCAGGTTTCAATCTGAAATGTTTAAACTGGTATCAAAACTGAAAAGTTCAAATCAAAACCAaattcaaaatgttttaattttttatacaattaaaatttGTTATGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256663 lncRNA downstream 14602 12653060 ~ 12658764 (-) True G189345
TU256661 lncRNA downstream 22276 12649311 ~ 12651090 (-) True G189344
TU256642 lncRNA downstream 60203 12612631 ~ 12613163 (-) False LOC111195455
TU256610 lncRNA downstream 132754 12538250 ~ 12540612 (-) True G189319
TU256606 lncRNA downstream 140033 12529464 ~ 12533333 (-) False G189317
TU256666 lncRNA upstream 17150 12704268 ~ 12704712 (-) True G189348
TU256669 lncRNA upstream 22555 12709673 ~ 12711013 (-) True G189349
TU256673 lncRNA upstream 80892 12768010 ~ 12768711 (-) True G189352
TU256699 lncRNA upstream 192827 12879945 ~ 12880344 (-) True G189376
TU256703 lncRNA upstream 203716 12890834 ~ 12891269 (-) True G189380
XM_007254543.3 mRNA downstream 7147 12662572 ~ 12666219 (-) True LOC103029205
XM_022682860.1 mRNA downstream 59497 12612611 ~ 12613869 (-) False LOC111195455
XM_022682859.1 mRNA downstream 59506 12612611 ~ 12613860 (-) False LOC111195455
XM_022682392.1 mRNA downstream 61349 12594526 ~ 12612017 (-) True sypl2
XM_022682391.1 mRNA downstream 81273 12574219 ~ 12592093 (-) True atxn7l2
XM_007254548.3 mRNA upstream 27370 12714488 ~ 12756183 (-) True LOC103030591
XM_007254549.3 mRNA upstream 27536 12714654 ~ 12756182 (-) False LOC103030591
XM_022682830.1 mRNA upstream 83617 12770735 ~ 12785185 (-) True LOC111195440
XM_022682395.1 mRNA upstream 133757 12820875 ~ 12854393 (-) False ippk
XM_022682394.1 mRNA upstream 133757 12820875 ~ 12854392 (-) True ippk
TU256647 other downstream 53800 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 327984 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 629073 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1681972 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2718559 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 375817 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2631526 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2744549 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3715673 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 4146732 16833850 ~ 16869461 (-) False cass4

Expression Profile