RNA id: XM_022682394.1


Basic Information

Item Value
RNA id XM_022682394.1
length 4679
RNA type mRNA
GC content 0.42
exon number 13
gene id ippk
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12820875 ~ 12854393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGCCGCGTTTCCTCAGTGTGTCAGGCGGAGCGCTGGTTTTAGCTAGTCTGGAAGTTTGAAGTCGGCCTAGTTTGCTAATTCTGGAATAGCCAGGgcaagagagaaggaaaaacgACAGTTCTGCGGTTCTTGACGTGTTATGGCACTGGATAAAATGGACGAAAATGACTGGAAATACCACGGAGAGGGGAACAAGAGCCTCGTTGTTTCTCACGTCCAGcACTCCAGAGTCCTTCGCCTTTTGAAGTATCCGTCAGAAGATGCAGAGAACACGCAGCGGacgaCAGAACAAGCTTTTCAGCACATTCTTAACATAGTGGAGTACAACAGGAATGTCATGAAGCCCTTACTCGGGGAGAAATATGTACACAGTGGAGAAGTCGTCAAACTCCCGCTAGACTTTGTCAGGCAGCTGTCTTTAAAGGTACAGCAGGAACGACCAGAATTGCGTTGTGACAAAGTCATGGACACTTTCAGTGGCTGCGGCCTGTGCCTTCCCAACCTCACCCACCTCTCGCCATGCCACTTTGGAGACCACCGGCCTCCACTGTGTGTAGAAATTAAGCCAAAATGTGGTTTTCTACCCTTTTCGAGACATGTTACTAAGGAATGCAAACGAAAAGTTTGCAGATTTTGTATGCATCAACATTTTAAGTTAGCAAACGGGAAGTGGAACAGACTCAGCAGGTATTGTCCGTTGGATCTCTTCTCAGGGAGCAAACAGCGAATGTTTGTTGCAATCAAGCACTTACTGGAAGAACCACAAAACAACTTGAAAATATTTAAGggTGGAGAGTTGATATACAGCTGTAAAGACGATGCCAAGCAGCAGCCAGACCTGAACGAGCTGGTACAGCACCTGTGGCCCTACTTCCACCACAGCAACGGCCTTTATAACGGGCACCAGTCCAGTAAAGCAGTCTTTAACGAGTTCATTCAGGTGATCTGCGGCGCTCTGCTGGGCAGTGGGGACTCCAGTCGCTCGGGGGAACCCAGGAAGGTGCAGTTGGCTGAGAGCAGGTCGGTGTGTGAGGCCAGTCCTCTTCACAGAGAACTACTGCGTAGCGGCAATCATGGTCTGCCCAAAGACTCTGTCCTTGCGAAAATCCTACAGGTTCAGATGTTGGACAACCTGGATATTGAAGGAGTTTACCCGCTATACAAGAGAGTGGAGCAGTATCTGGAGGAGTTTCCtaaagagagGAACAGACTACAGGTAGATGGCCCATATGATGAAGGTTTCCTGGAGAAGGTGAAAACCTGTCCGTCTGAAGATGATGGCTCCATAGAATACGCTGTTGGAAAGGTTCTCCAGTACAGAGTCGCGATGACGGCCAAGGACTGCTCCATCATGATCACGTTCGCTCCATGTGGAGAAGATGAGAAACTACAAGCCAACTTGGAGATCCAGCCTCCGAAGCCTCGCTTCACATACTCAGTCTCCATCCTGGATTTGGACCCCAAACCTTATGACAGTATCCCGCACCAGTACAAGCTGGACTCCAAGATCGTCAACTACTACCTGCGGAGCACAACAAGCGCCCAGGATCTCCCTACATCCAACCATTACAAGGACAGGCAGGACTGCACGCTGCTCTTCCATCCTGTATGAACAACCTCGCTCCTCTCCACTTCCTCCTCACTACTCCAGAGTGCTGCTTTTGATGTGAACgacagaaaaaagcaaaaactgaaGATTAAGATGCATCCAGATATATATTcatttctttgttctttgtcaGAGGCTCCTCTCGTTGTCCTCTCCTCCCCACCTTTACGATGTGtgccatatttttatttttaaatgtgaaagtgGCCGGAAGCTCAGTGTTCTCAGTGCTTCTGAATTGGTATAATCGGTCCGTTTGTTTGGTGTTAGCCAGTGGAGCTAGTTTTTTCTGTGGGGCACATTCAAACTGGGGCTGGCCTCCTCATGCACAGTGCCTGGGTGGACCGAGGAAGACGAGGGTGAGCTGTTGCTGTAGTGCAGTCTGACTGGTAAAGAAGTGCCAAAACTGGCTTGCGTGTGGTCGTTCCTGTCACGGATTACAAATAATAGCTTTTAATTGAGAGAGGAGCCATTAAGTTGCAGGGGGTCCTCGGTATGTGTGCAAGTAAGTGTGGAGCATTATTAGTGTCTACATTTTATAgacttaattatattaaattaaagatgGTTACTTAAGGTGAAGTAAGACTACTACTGCTGTTCTACATCGGTTCCTGAGGTCTGTGCTGGCTTACAGTTTTTTAGCAGTTGGTCAGAAATATTGTACTGAACGCTTGAATGAATGCAGGGtggtgagtttgtttatttgattatcTTAAACACCCTGACTGAACTTGTTCTTTAAATACTGGGGTCTAATCTGATCTCAGTAAGACAGTACTGTATTAAAGAGTCATTATAAAGGTTCTAGGTTTTTCCTCAAGCTTCTTGAACAGTTTGAGAAGGGTAGAGAGAGACCTTTACACTCCAAACCACTCCCAACTTTACACACTACACCAAAAATGACCAgtccacacacccacaccaccaATCACACATCAAGCTACATTAAGGAGAAGTATTCAGTTACTTTACTGCAGCTTACAGGAATACTCCAGCATTTTCAGCCAATAAAGCACCTTCCTTCTCATTTAcatctatttttagtttacagcCAATACATTTTCTTCAGTACAGAGATGCATGTCCGCTGTTTGCCAGGTTTCAGTCCACTTATTTGAGTATTTTGATAAatctaatatataaaaacaaagccTAGTTGGAATTGGCAGGTGTTAAATAAAAGTGGCAAATTTTGCATTAATACACAATTTAAATGAAAGGAGAAAAGAGTCTTTGGATGTAGTGAAATATGATAGAATTTAAAATTTTGGGGAGTAACCCACCTCCGATCGctccagcattctgaaatacagagctttaAGCCGATGCTcctaacaggcttacaatgctagtgataggagTGTACAGCTGCCAATGAAAAGAaattttaaattacataaaaactgGTTCTTTATAGAGGGAAATGTGGACATTTAATGACTATATTACACAAATAATCAAGTTTCTAAGAGATTTGTCAAATCTCTCcagtgagtgtatgtgtatatgctGGAAAATATACCCAGGAAGTTGTTAAACCACTTATTGTTGGTCTAATTACTGAGGGTTTAATGAGCTACGCCCCTCGCTATACAATAACAGGCTGTTGATGTCAACACACTATCATTTTAAGCCCTGTTTGGAAGGGATAAGATTTACAGCGAAAGGGTGGGACAGGAATTCACTCTGGATACATTTTAGCATCGATGgctgagatgggagtggctactcaaTTTATGCACTGCTGTCACCTCCAAAAACCCTAGCTTGAAGCTCATCTTCAGGATTTGCATTTTGTATGTTGTAAAGCTTCTCCTTGAGGGTTGCCACAGACTTCTAGAACAACCTGAGCTGTCTGTGCATCATCACATTCAACAGAACCAAACGCCTTCTCAAGCATCTCTGTACTTCAGAAAAGCAGTGAAGAATTGCAGCAGATTTTCGACAGATTCCTTGCACAGGATTAACATTACCTGAGGTTATCTTTATGAGTGAGGAAGAGCACAatcccaaaaaataaaaataaactgacaTTGCACATTTGTATAAGACAAAATCACTGAGGATTTTCTGTAGTAATTACGTTACCCTGAAAATACAAATCACATCCCAATAGGGCACTAGTGGACAGTCCAGATCCAGAAAGTACAAATCCACTGATAGAATCTAAAAaacaaatgtcattttttttgtttgttttttgcaatactgttatctgtttttaaaactgctgcCATTGTAAATAAAGGCAGATTTATTTTGAGGTACAAATATTGGCTTATCCTTCAACTGAGTAGTGTAATATAACATTCTATTTAAATTTAGACTTGAAATCACAAatttgactttatttatttattttttgttaatatctGAAGCATCTTTGAACACATAATTAGGTCATTTATGTCATTGTTAAAACACATGGAGTCATACTAACGGTACCTCTCTACTGACCTTATTCATTAATGCCCGGGGTGGATTTTCTGGACCCGGATTGGCCACCTCTGCTAAAGAGCTTTAGAGTGGCGAACATCATGGAAAATATCTAGAACTTCTGATATGTGACAGTTAAacactatataaatacacactttttttatCGTTATTTGACCTTGTTGGGAAGACTAAACAGTTGTGGGCTGGTGCTGATAATCAATATCTGTCTATATCTGCTGATTACAGATCGAGTGATAAACCTTTTGTGTCCTTCATGCGGTTTTTGCCTCAAGTGTGACGAGCAGCAAGAAAATCCCAAACTCTGCCGCTTTGTTTCACAAGTGTGTGATTCTGTCTAGAACACACGTCCTCAGCTTCAGCAGTGTGTGATTTTGAAGTAATTATGTCGATAGTTGATtgattttctgtgatttttttttttgatcaatCATTTTGTCTGTTCCTTTTTATAAACCACTGAAGTTTGAGTTCTGTTTACCCCGTTTTATTACCCCTCCCACAGTACCTGTGCAGTTTCATGACTCATGACTGTAGTGAAGTTCAGAGGATTTTGTCAGAATTCACAGCCTTTACTCTTCACATAAacgtttttgtttattttgtata

Function

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0035299 inositol pentakisphosphate 2-kinase activity molecular_function

KEGG:

id description
K10572 IPPK; inositol-pentakisphosphate 2-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256673 lncRNA downstream 52164 12768010 ~ 12768711 (-) True G189352
TU256641 lncRNA downstream 106843 12651665 ~ 12714032 (-) True LOC111195455
TU256699 lncRNA upstream 25553 12879945 ~ 12880344 (-) True G189376
TU256703 lncRNA upstream 36442 12890834 ~ 12891269 (-) True G189380
TU256704 lncRNA upstream 40471 12894863 ~ 12896608 (-) True G189381
TU256708 lncRNA upstream 48545 12902937 ~ 12903160 (-) True G189385
TU256737 lncRNA upstream 175778 13030170 ~ 13032240 (-) True G189402
XM_022682830.1 mRNA downstream 35690 12770735 ~ 12785185 (-) True LOC111195440
XM_007254548.3 mRNA downstream 64692 12714488 ~ 12756183 (-) True LOC103030591
XM_007254549.3 mRNA downstream 64693 12714654 ~ 12756182 (-) False LOC103030591
XM_015607188.2 mRNA downstream 133757 12673366 ~ 12687118 (-) True gpr61
XM_007254543.3 mRNA downstream 154656 12662572 ~ 12666219 (-) True LOC103029205
XM_007229612.2 mRNA upstream 26430 12880822 ~ 12884782 (-) True LOC103025083
XM_007229619.3 mRNA upstream 50938 12905330 ~ 12922980 (-) True shisa5
XM_022682398.1 mRNA upstream 71664 12926056 ~ 12940460 (-) False nuf2
XM_007229617.3 mRNA upstream 71664 12926056 ~ 12939867 (-) False nuf2
XM_015605043.2 mRNA upstream 71664 12926056 ~ 12939782 (-) True nuf2
TU256647 other downstream 201309 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 475493 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 776582 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1829481 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2866068 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 208543 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2464252 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2577275 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3548399 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3979458 16833850 ~ 16869461 (-) False cass4

Expression Profile