RNA id: XM_007229617.3


Basic Information

Item Value
RNA id XM_007229617.3
length 1612
RNA type mRNA
GC content 0.46
exon number 14
gene id nuf2
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12926056 ~ 12940460 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGCGCTCTGCTGCGCTGGGTGGTTGGTGGAAGTGACGTCAGGGGCGGGTAAAGTTTAAATCGGCTGCTGGAGGCGAGAGGCAGctgcaatggaaaacacatttCCCGTGTACAAAGTCGACGCTATTGTGCAGTTTTTCCGCACAGATGTTTTAACGGGCCAAGAAGCGAAGCACTTCGCTAAAAGTGATCTCACTCCAAACCCCAAGGCAGATGTTATACAAAGAGTCTACATGAGGGTGCTACAGCTTCTGTATGGTTTCCGTCCTGAATGCCATTACCTGGCACCTCTATCTGAAAACATCCAGTGTATGTCTTTGTATGAATATGCCACTCCAATTATGAGTGTCTACTTGTCCATGTGCCAGTTTTTACCGATGTGTCATGTGTACGACTTTTCACTGAATGACTTGCTCAATCCAAagccAAAACGCACAATCACCATCCTGAGTGGCATCCAGAACTTTCTACACTTTAGGAAACAGAGGCTGGAAATAATAGCAGGGCATCAGCAAGCTTTTCGGGCAGACATGGATAAACTTCAGGCTTGCAACAAAGGAATTAAGGATGCTGAGAAGATGATCGAGAAGCTGATGATTATCCCACCAGAGCAGCAGGCAGAAGCTAAGGAGTTGGCAGCTGCCCTCAAAGAAGTAAACAGTGCCACCACACAGGAGTCCCAAGAAGTGAGTGCCCTGAATGAACAGGTGGCCGAGTGCAAAACTGAAATTGCAGAAAAGTCACAGAAACTGAGCCAGAGGAAGTTAGAAGTGGCCACCCAGAAGGATGAGATCGCCAAGCTCAAGTCACAGATAGTAGAATCCCCCGAAGAAGTCAAAAATGAAATGGAGAAGATGAAGGAAAACATCAAGAACATAAAGAATTCAAAGgagCTGGCTGATGAGATGCTGGTAGACCTGCAGATCAAGGTGCAGTGTGCCAGCCAGGGGGAAGCAGACATCCAGGTCATACTGAAACAGCTGCATGACCTGCAGGCTAGCATGTGCAAGACCAACCAGCAGAAGGAGGAGGTCCAGAGCTTGGTGGCCCTCTCTGAGAACCTGCAGAAGGAGCTGAAGGCCCTTAGCAATGAAGAGGGTCAGATGAAGAGAGCGCTGGCCATGAAACTAGACAAGGAGTCCAAGCAGCAGATACGCCGCCAGAAGAAGAAGGAGCTAAAGGACCAGCATGTCCAAAGTATTATTGGgcaatatgacaaaatccATGAAAAACGGGAGGAAATTGTGGAACGGATAAAGCACATCAACTCAGAAACACGGCAGTTCAAGGAGAAGATGCAGAAGCTGCGAGACACCTGCAACCAGAACAGTGAAAAGGCTCAGGCTATCTATGATCGTCTTCTGACCACACTGGAGCAGTTCCACAAGCGCATTGAGAATATTGTGGTAGAGGCCACTGCAGACATGACgaaaatgaaaactgtgttttaaactaATTTTTGTAGACACAGTTTTGAGGTATGCTTCCTTTTTGTCATTGTAGTCCTTTTTTGAATATTTccatttatgtgtgtgtgtgtgtatattgttcTACTGTAAATAATTGTGCTCCTCTGTTTTGTTGAATAAAATTCCATATCTTTGTTCGATA

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256708 lncRNA downstream 22896 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 29448 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 34787 12890834 ~ 12891269 (-) True G189380
TU256699 lncRNA downstream 45712 12879945 ~ 12880344 (-) True G189376
TU256673 lncRNA downstream 157345 12768010 ~ 12768711 (-) True G189352
TU256737 lncRNA upstream 90303 13030170 ~ 13032240 (-) True G189402
TU256742 lncRNA upstream 110692 13050559 ~ 13053733 (-) True G189404
TU256761 lncRNA upstream 249911 13189778 ~ 13194807 (-) True G189417
TU256763 lncRNA upstream 267173 13207040 ~ 13210220 (-) True G189418
TU256765 lncRNA upstream 270921 13210788 ~ 13211185 (-) True G189419
XM_007229619.3 mRNA downstream 3076 12905330 ~ 12922980 (-) True shisa5
XM_007229612.2 mRNA downstream 41274 12880822 ~ 12884782 (-) True LOC103025083
XM_022682395.1 mRNA downstream 71663 12820875 ~ 12854393 (-) False ippk
XM_022682394.1 mRNA downstream 71664 12820875 ~ 12854392 (-) True ippk
XM_022682830.1 mRNA downstream 140871 12770735 ~ 12785185 (-) True LOC111195440
XM_022682399.1 mRNA upstream 12643 12952510 ~ 12972311 (-) True LOC103034476
XM_007229620.3 mRNA upstream 34073 12973940 ~ 12980817 (-) True LOC103027102
XM_022682400.1 mRNA upstream 43554 12983421 ~ 12990268 (-) True LOC111195380
XM_007229621.3 mRNA upstream 54612 12994479 ~ 12998610 (-) False LOC103027392
XM_022682401.1 mRNA upstream 54612 12994479 ~ 12998610 (-) False LOC103027392
TU256647 other downstream 306490 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 580674 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 881763 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1934662 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2971249 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 123068 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2378777 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2491800 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3462924 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3893983 16833850 ~ 16869461 (-) False cass4

Expression Profile