RNA id: XM_022682399.1


Basic Information

Item Value
RNA id XM_022682399.1
length 5181
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC103034476
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12952510 ~ 12972311 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGACGCAgcctttagttttttaatactgAATCTAGACTTTTCCCATCCCCCCTGACCACCCCCTCTCCGAGCCCTGGTTTAATTTATTCTCCTGTGTTTTTTACTCTCTGTGGGTCATATTTAATTCGTTCATTATCGCCCCCGCCCCTCCTCCCGCTCTGGCCGTGGTGAGGATGCCCGTTTGCCGCTGGTGAATCCGGTCTCGGCCCTCCTCCTGTGTCGTCACCTCGCTCGACTACAAAACGCTTCATGGAGACCCAGCGGCCGTCTCCGGTCCTGGCGAGCGGCGACACGGGAGCGAAATGAAAGCCTGGGCTTTGGTTTTCAGGTCGGCGGGGAGCCTGCTTGGCCGGCCGGCCCGACCGGGGAGCAGCGCGGTGCCGCGGAGAGGGACAGCCGGCTCAGTCTCACCAGCCAGCGGCAAGTATGAGCCAAGCTTTGGGTTGCTGTTTGACATAGATGGGGTTTTGGTCCGTGGCAGGACCCCCATCCCAGCCGCCAAGAAAGCTTTTCAAAAGTTGGTGGACTCCAAAGGCCAGTTAGTTGTTCCTGTTGTTTTTGTCACAAACGCTGGGAACTGTCTTCGGCAGAAGAAAGCAGATCAGCTGTCTCATATACTGGGCATTCCTATTTCCCAAGATCAAGTCATGATGTCTCACAGTCctttaaaaatgttcagaaaatttCATGAGAAGTGTGTGCTGGTATCGGGACAGGGCCCAGTGCTGGACATAGCCAAAAACGTGGGCTTTACCAATGTGGTCAGTATCGACATGCTGAGAGAATCTTTCCCATTGCTGGACATGGTGGATCATAACAGACGCCCCAAACTACCAtcCTCCCCTATTGTGAACCTGCCTAAGGTTGAAGCTGTGATTCTTTTTGGGGAGCCCATTCGATGGGAGACCAACCTGCAGCTGATAATCGATGTTTTACTGACCAGCGGGAATCTGAGTAATGTGTACGAAACCTCTCACTCCTCCCATCTGCCTCTACTGGCCTGTAACATGGACCTCATGTGGATGGCAGAAGCACAAGCTCCACGATTCGGTCACGGCACATTCATGGTGTGTCTAGAGAACATCTATAAGAAAATCACAGGCCAGGATCTGAAGTACGAGGCTTTGATGGGAAAACCCAGTGAACTTACCTACCACTACGCAGAATATCTCATCCGAGAGCAGGCCGCCGAGAGGGGCTGGAATAGGCCAATCAGATCCCTCTACGCTATTGGAGACAACCTAATGACGGACATCTACGGTGCCAACCTCTACAACCGCTACCTCGAGGAACGGCTGGCCAGGAAGAGCACCAAAGCTGTGGCACAAGTGGTAGCTGCTACCGGAGCGCCCACGCCAGTCAGCCAGGAATTGGACACAGAGAGCATCTGGGAGAGCGAGCTGGCCTCCCCGTCAGCCACCTCCTGCAAGTCCATCCTGGTGTGCACAGGAGTGTACAACCCCCACAACGAGGTGCCTAAAGACGCGAGCCAGTGCATCAAGGAGACCGTGTTCCACGGGCACCGCGACTTCCGCTTCGACCCAGCGCTGGTGGAGCCCGGGAACGTTGTTCAGGATGTGGACGCTGCTGTCGAACTGATTTTTAAAATAGAGAAATTCTCAACTGCAGTTTAGGTAAATTAAGAAACCTGCATGGACCTTCATCAGAAGAATCCGTAGTTTGTCATTTTTTGGACACATTACCATTTCACAACTGATATCAAATAGAATCTCAATAAGAACAAAGTACGAacactttattgtttttaagcCTAATGTCTTCAGCATTCGTATCATAATCCTGCTGAAGAAACTAGATTGGTCAGTTCAAACTGTTCAAGCTGGTTAAGCAGGTTGATCAGCATAGGATGATTTTGATTGAGTTTGATAATGTTTATGGTCATTAGCTGATTAGTTGATTACTCTTACCACGAGAATCAATCAGTATGATCAAGCTTATTGACCATCATAGGCACCACTGTAAGGTGTGCTTATGATTGGGTTTGTTGGTTTAGCTGGTTTGTCAGTATAGTCAGACCAAGCTGATGGACCATCGTGACCATCTTAACCAAGCTAGTGAAGACCGTTGACAAGTAAAGCCATCATTACTAGCCTCAGCTGGCTAGTCAACCAGTATGACCTAGTTTTTTGGCCAGCTTCTTCAAGATAGTCAGCCAGTATAACCAAGCCGGCTAACCAGCAGGACCAGCCCTACCAAGTAAGTCTACCAGTATGACCAAGGTTGTTGACCCCCAAAGAGACCACTATATGTTTTGCATTTgattaattttgtttgtttagctgGTTTACCTGTATAGTCAGCCAGTATGAACAAGCAAgtagaccagcatgaccagtcTCAGCAGGCTAGTCAACTGGTATGATGCATTTTGTTGACCTGTCTGACCAACCTGTTCTAGCTAGTAAACCAGCATAACCATCATGACCATCCTCATTGACCAGCATAACTAGCCTCAGAAGGCTGTTCAACCATTATGACCAAGATACCCTCATAGGGACCTGTATAATGTGTGCTTTTCATTAAGTTTGTTGGTCTTGATGGTTTACCAGTATTAGTAATCCAGTATGACCAAGCAAGTCAATCATTATGATCTAGTTTGTTGACCGGCCTGACCAGCCTTTTTAAAGTTAATCAACCACTTTGGCCAATCTGGCAACACTACAAATATCATGACTACAGTGGTTCACTAGCTTAACCAGTACCAGACTAGTCCACCACTATGACAGTCCTAACTGCTAGTTTACTTGTTTGACCAGCTTGACCAAAAGTATTAACTACTCTACCAGTTTATGCAGCTGGCTTAACAGTATTGGGTAAATAGTTTTTAGCCTTTCCAGGACATTGAccatgaaaatccaaaaatcctTTTCTTGACCTCCTGAGAAGGATCAGAATCAGAAAATTAGAGCACCTTCAAAAATAGTGCTGTTTGTCCTTCCAACAAATAACCATTTAATAACAATTTCTACCTTTTTATTGCAACAATTTTTACATTAAGGTAATAAAATGTCCTTTATGTTGAcatatatcatttatttaatgcatGCATAGCACAGTATTCTACACAAGTAGAGAAAGAAACTGACTTCTCCCCAAAAGGAAAAATGGTTAATATATGGTTATTCGTGAGAAGGGCTTAATTAGGTCAGTATAAAGTTTACTAGTTCAGTTTTCTGTTTGAGGTTAAAATCTAAATTAGAAACTGGGTTTCAAACTTCaggatatattttttctaatttattataGTGAAAAGGTTTTCATTTCTAGTTTTTCATTTCTGCTCAGGAATCTGAATTTCAGAGAAAATATAAAGTCTGTTTGATTATACTATCTGATTGGGGGGGAAATAAGAAAATCAagtatatattcatttttgtttGATGAAATTCAGATTGTGAGGTGGAGAAATGTAAAACTAGAATATTggaaattgtatttaaaaatatgtttcgTTTAAATATACCaaattggaaaaaaacagaaataatgagGTTTTAACCTATTTTTCTATATTGAGCCTAAATGGTCAGGAAACTGATAAATGTTCTAGTGACCTCTTTAGATCAGACTGTGGGGAGCAGAAAATACCTATAATACTGTAACTGGATTTTattgcagtgtgtttttttttttttttgcacatttttgcaTATCGTGAACCATACTTATACAGGCTACGCATAATTACAGTTcagttattttgttattttattacgGTACTTTACTGTAAATCTGTAGTTCAGCCATTTATTTTGTGATTCTAACAGTAATATAGTTCAGTGTGGCTCTTCAGTGATTAGGGTTAGAGTGAACATGACCCTTTTCCACTGAGTCGAGGCCAGTTTTACCATATTATTTACTCTGATACTGTTTAAACACAGGGtacatgttcacacagcagtgTAAACAGTTTTGAGTTGAATCAATGCtgtatttttcagttttgtcaATAGAAAGTGTTTGTCAGTTTTTAGAATCAATATTGTAGAGGCACTGTGAGACCCATCTGATCCTTCTTCATATCTGTGTATTTTACAGTcggttttatttttaacaaaaatactgtttgttgttactgcttcatttattttaagtagtttagtaatgtaatatatagaaTTTAAGCACAATCGCAAGCAGTAACAAAACACACAGgtcagttatttattattatttttttttctgtttcagacAACCTGGCATTATACATAAAATGTAatcaataatatattattattgtttttaggcCTGTCAAGATAATTGCatcatattaatttatttatcatacaatatatgaacaTGACATGTCAacttttgctgacctcaatattgcACATTATATTTTTGGAGGAAAGCCCATTTACCACTTTGTTGAATTACAGTGacttattcatatattttatttagaatataatttttttgtattttcatttctaaatattagttctaaattatataaaataaaaaataattaaatatcctaataaataaaagtcttacaattttaataatactatttatcgcaattatttctaggacaatatatcatccataactaaaaactaaaaatagttATCGTGTCAGGCCTGTAGTAAACATATACTTGTTAATATTcccacatttaataataaatatctgTAACAATTGCTATagactgttttgttttattgaaacaaacaaagaaatagGTCAGCATAATCAGTTTTGTTCTCagtgttttacatttacagttctTTTATTGTTACTTTTGTTGTGCACTAATGGTGTCACTTGTGTcatcatcatttattttacagtaattagGATTTTAGATAGTAAATCTGGTTCAAAAGAATTGCTTTTTACATGAGCAAAGGGAGCATTTTGATACGACACTGAATTTACTGAAATTACTctggtctcatttttttaacGGTGCCTTATCTATGATTTTCACCCAAGTTACAGTTTTTGAAAATgttcagtttctgttttttgtctGAAAAACCTCGTACACTCAGATTGCACCATTAGAACCACTAAGTTGTCAACATAGCATTAAAAATGGTGCCACTGTTCTAACAGAGAACTGCATGTGTGATGTACTTATTTTCTATTAACAGATTTAGAGTTATTcaaagtattaaataaataaagcagtatTTCATTCAGATCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU256708 lncRNA downstream 49350 12902937 ~ 12903160 (-) True G189385
TU256704 lncRNA downstream 55902 12894863 ~ 12896608 (-) True G189381
TU256703 lncRNA downstream 61241 12890834 ~ 12891269 (-) True G189380
TU256699 lncRNA downstream 72166 12879945 ~ 12880344 (-) True G189376
TU256673 lncRNA downstream 183799 12768010 ~ 12768711 (-) True G189352
TU256737 lncRNA upstream 57859 13030170 ~ 13032240 (-) True G189402
TU256742 lncRNA upstream 78248 13050559 ~ 13053733 (-) True G189404
TU256761 lncRNA upstream 217467 13189778 ~ 13194807 (-) True G189417
TU256763 lncRNA upstream 234729 13207040 ~ 13210220 (-) True G189418
TU256765 lncRNA upstream 238477 13210788 ~ 13211185 (-) True G189419
XM_022682398.1 mRNA downstream 12050 12926056 ~ 12940460 (-) False nuf2
XM_007229617.3 mRNA downstream 12643 12926056 ~ 12939867 (-) False nuf2
XM_015605043.2 mRNA downstream 12728 12926056 ~ 12939782 (-) True nuf2
XM_007229619.3 mRNA downstream 29530 12905330 ~ 12922980 (-) True shisa5
XM_007229612.2 mRNA downstream 67728 12880822 ~ 12884782 (-) True LOC103025083
XM_007229620.3 mRNA upstream 1629 12973940 ~ 12980817 (-) True LOC103027102
XM_022682400.1 mRNA upstream 11110 12983421 ~ 12990268 (-) True LOC111195380
XM_007229621.3 mRNA upstream 22168 12994479 ~ 12998610 (-) False LOC103027392
XM_022682401.1 mRNA upstream 22168 12994479 ~ 12998610 (-) False LOC103027392
XM_022682402.1 mRNA upstream 22168 12994479 ~ 12998575 (-) True LOC103027392
TU256647 other downstream 332944 12614912 ~ 12619566 (-) True G189335
TU256382 other downstream 607128 12332545 ~ 12345382 (-) False mapkapk3
TU256229 other downstream 908217 12043913 ~ 12044293 (-) True G189055
TU256039 other downstream 1961116 10990817 ~ 10991394 (-) True G188898
TU255454 other downstream 2997703 9951985 ~ 9954807 (-) False LOC111195437
XR_002651608.1 other upstream 90624 13062935 ~ 13076516 (-) False tsen2
TU257791 other upstream 2346333 15318644 ~ 15322171 (-) False LOC103024926
TU257808 other upstream 2459356 15431667 ~ 15457265 (-) False LOC103026676
TU258141 other upstream 3430480 16402791 ~ 16460928 (-) True G190405
XR_002651612.1 other upstream 3861539 16833850 ~ 16869461 (-) False cass4

Expression Profile