RNA id: TCONS_00011782


Basic Information

Item Value
RNA id TCONS_00011782
length 579
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_005956
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23132666 ~ 23226460 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGAGGGTTGGCTCTCTGGGGCAAACAAGCTGGATCAGGAGTTTCAGGAAGGGGAAGGGGCTGAAATAGACAGGGTTGGAAGCCTCCGCAAGGCTCCTTACAGCAGGAACAATAGTCCAGCAGAGCCATTAAGAAATGATGTAGAATATTATGGGAGATCTTCAAGAAGTCCTGTCATGCTGTTTGACATccaagacaacaacatgaatgccAACTCATTCACGCAACCCCTGTCCCAGAGCAGCAGTCCTGAGCCTGGACGCATGAGCTGTGGGATATTTCAGGCTCTGTACAATTACGTGCCTCAGAATGATGATGAGCTGGAGCTGCAGGAAGGAGACCTGGTCAACGTCATGGAGAAATGTGATGATGGCTGGTTTGTGGGTACATCAAAGAGGACGAAACAGTTTGGCACTTTTCCAGGAAATTATGTGAAAGCTGTTAATTTGTGACATACTGTAATACAAATGAAGAATTGACGGTTTGTATGAAGCGATTCTAGTGCTATGCTTGAGCAGCCTGATCTGTTTGGGACACTCTTACCTGTTGACCTCAAATGAAGACTTTCCTCCTGTCC

Function

GO: NA

KEGG:

id description
ko04520 Adherens junction
ko04910 Insulin signaling pathway
ko03320 PPAR signaling pathway
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDART00000163393

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011781 lncRNA upstream 3126 23195965 ~ 23210974 (+) False XLOC_005956
TCONS_00013596 lncRNA upstream 167231 23032097 ~ 23046869 (+) True XLOC_005954
TCONS_00011771 lncRNA upstream 243628 22968661 ~ 22970472 (+) True XLOC_005953
TCONS_00013595 lncRNA upstream 372706 22840009 ~ 22841394 (+) True XLOC_005951
TCONS_00013396 lncRNA upstream 390226 22821708 ~ 22823874 (+) False XLOC_005950
TCONS_00011783 lncRNA downstream 4543 23227531 ~ 23235576 (+) False XLOC_005957
TCONS_00011784 lncRNA downstream 4543 23227531 ~ 23240577 (+) True XLOC_005957
TCONS_00013597 lncRNA downstream 165505 23388493 ~ 23410510 (+) False XLOC_005959
TCONS_00013598 lncRNA downstream 166987 23389975 ~ 23410510 (+) True XLOC_005959
TCONS_00013599 lncRNA downstream 1347632 24570620 ~ 24572928 (+) True XLOC_005975
TCONS_00011780 mRNA upstream 9061 23176330 ~ 23205039 (+) False XLOC_005956
TCONS_00011776 mRNA upstream 47096 23132666 ~ 23167004 (+) False XLOC_005956
TCONS_00011774 mRNA upstream 82188 23095228 ~ 23131912 (+) False XLOC_005955
TCONS_00011773 mRNA upstream 82188 23095228 ~ 23131912 (+) False XLOC_005955
TCONS_00011775 mRNA upstream 82188 23104134 ~ 23131912 (+) True XLOC_005955
TCONS_00011785 mRNA downstream 59561 23282549 ~ 23388134 (+) True XLOC_005958
TCONS_00011786 mRNA downstream 400358 23623346 ~ 23630027 (+) True XLOC_005960
TCONS_00011788 mRNA downstream 446671 23669659 ~ 23735251 (+) False XLOC_005961
TCONS_00011787 mRNA downstream 446671 23669659 ~ 23735251 (+) False XLOC_005961
TCONS_00011789 mRNA downstream 446673 23669661 ~ 23675232 (+) False XLOC_005961
TCONS_00011768 other upstream 341683 22863545 ~ 22872417 (+) False XLOC_005952
TCONS_00011748 other upstream 611534 22555938 ~ 22602566 (+) False XLOC_005943
TCONS_00011749 other upstream 631620 22571943 ~ 22582480 (+) True XLOC_005944
TCONS_00011743 other upstream 664289 22480857 ~ 22549811 (+) False XLOC_005942
TCONS_00011721 other upstream 896944 22303916 ~ 22317156 (+) False XLOC_005940
TCONS_00011791 other downstream 598198 23821186 ~ 23821300 (+) True XLOC_005962
TCONS_00011801 other downstream 1064735 24287723 ~ 24290238 (+) True XLOC_005969
TCONS_00011821 other downstream 1605765 24828753 ~ 24828869 (+) True XLOC_005984
TCONS_00011850 other downstream 2220996 25443984 ~ 25444370 (+) False XLOC_005997
TCONS_00011851 other downstream 2221296 25444284 ~ 25444523 (+) True XLOC_005997

Expression Profile

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