RNA id: TCONS_00012643


Basic Information

Item Value
RNA id TCONS_00012643
length 1301
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_006530
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15918449 ~ 15929402 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACACGTTTGTTTTGAGAGATGACACCAGTACTGTGTATGCTGAGGTCGCCAAGATTCTTACTTCAACTGGAAAATGGAAACGACTCAAGAAAGACAACCCTCGCTTTAATTTAATGCTGGGAGAGAGAAATCGGCTGCCTTTTGGACGGCTGGGTCATGAACCAGGACTCATGCAGCTGGTGAATTATTATAGAGGAGCCGATAAACTGTGTCGCAAAGCATCACTGGTCAAGATTATCAAGACCAGTCCAGAGTTGAAGGACTCCTGTAACTGGTTTCCTGAGTCCTACATCATATACCCAACCAACCTCAACACCCCGGTGGCCCCGGCCACCAACGGCATCAGCCACATGAAGAGCAACCCAAAGACAGATGAGCGAGAAGTCTTCTTAGCATCTTATAACTCCAGAAAGGAAAGTGGAGATGGGACAGTGTGGATAGCCAAATCATCAGCAGGCGCAAAAGGTGCTGGCATTTTGATTTCTCATGACGCAAACCAGTTGCTGGAGTTCATTGATAATCAAGGCCAAGTGCATGTCATTCAGAAGTATCTGGAGAAACCTCTGCTGCTTGAGCCAGGTCATCGCAAATTCGATATAAGAAGTTGGGTGCTTGTGGACCATCAGTACAACATCTACCTGTACCGTGAGGGTGTGCTGAGGACATCGTCTGAGCCCTACAACAGCTCAGATCTCCAGAATATGACCAGTCATCTGACAAACCACTGTATTCAGAAAGAGCATTCGCAGAACTATGGCCGATATGAGGAGGGCAATGAAATGTTTTTTGATGAGTTTAAACAGTACCTGCTGAACACACACAATCTGGCTATGGAGACCTCTATTTTACCTCAGATCAAGCATATAATCAGgaGCTGTCTTGCATGCATCGAACCAGCCATCAGCACAAAGCACCTCTCCTACCAGAGCTTCCAGCTCTTTGGCTTTGACTTTATGCTGGACGAAAGCTTTAAAGTCTGGCTGATTGAGATCAATGGGGCACCTGCCTGTGCACAgaAATTGTACCCTGAGCTCTGTCAAGGGATCGTGGATGTGGCCATCTCCACAGTCTTCTCTCTGAGTGCGGATGCTCTCTCATCTTCACCTCCATTCTCCACCTCTCCATCTTTGTCCTCCAACTCCTGCTCCTCACCCAAGATCAGAGCACCCCATCACTTCGGCCCATTCAGCAAACTATAAATGACTTGCAAAATACTGCCATTATCATGCAAACCCCACTGTCCCACTTAAAACAACATCAGCCAGTCTAAAATTTTAAGGGGCTTGGGGTTGAACATGC

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005575 cellular_component cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-060929-608 Predicted to enable ATP binding activity and ligase activity. Predicted to act upstream of or within cellular protein modification process. Orthologous to human TTL (tubulin tyrosine ligase).

Ensembl:

ensembl_id ENSDART00000142732

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012638 lncRNA downstream 221458 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 338297 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 340404 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 460825 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 936869 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013769 lncRNA upstream 331717 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 939446 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1565363 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1592071 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1592071 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00012642 mRNA downstream 53114 15853677 ~ 15865335 (-) True XLOC_006529
TCONS_00012641 mRNA downstream 119058 15763280 ~ 15799391 (-) True XLOC_006528
TCONS_00012639 mRNA downstream 124864 15762278 ~ 15793585 (-) False XLOC_006528
TCONS_00012640 mRNA downstream 124864 15762279 ~ 15793585 (-) False XLOC_006528
TCONS_00012637 mRNA downstream 215777 15685437 ~ 15702672 (-) False XLOC_006527
TCONS_00012646 mRNA upstream 28574 15957508 ~ 15982707 (-) False XLOC_006531
TCONS_00012645 mRNA upstream 28574 15957508 ~ 15982707 (-) False XLOC_006531
TCONS_00012647 mRNA upstream 28948 15957882 ~ 15994472 (-) False XLOC_006531
TCONS_00012650 mRNA upstream 29248 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012651 mRNA upstream 29248 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012624 other downstream 1533911 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2247912 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2273887 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2327879 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3432457 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 378833 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 1845723 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2715956 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2720558 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 2786376 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_06638215_06643427.mRNA True 2002 mRNA 0.46 7 CI01180000 6637809 ~ 6643820 (+)