RNA id: TCONS_00001081


Basic Information

Item Value
RNA id TCONS_00001081
length 3336
RNA type mRNA
GC content 0.51
exon number 14
gene id XLOC_000634
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50538839 ~ 50557030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCTGGAAACAACTGGGAACAAGATGGCTGAGTTTGGACTGGAAATGAGTTTTTCTCCACTCGCACCAAAAGCTGGACTGAAACCTCTCGAAATGATTTTCAAGTAAAGCCTGCAAGTATAAAGCTTTCTTAAGGTACTCGGGTGCGTTTTTTAGACAGAAAAGCATCCAGCGGTTTGTGTTTAGTTTCCTCAAACGCGTTTTCTCGCTATTTCTATTGCATAACACCTTAAAAGTCGATTTAGtgcttttttaaacatctgaaaaCCCCGTTAGACTTAACAGAAATCAACATCAAAacttttttaactcaaataaagAATCGCTTTGCGCATTTTCGCATTAAGACAGAGTAAAAAGCGACTAAAATGCAgtcgtttgtttatattaatgtaatgttACTGTAGAAATACACGATGAGCTCCAGTCGCGTTCGTCCTCAAGCGCCGCAGAGCCCGGCGGCATCTGCATCCGCATCTCCTCCACCGCATGAAGGCATCGAGATGGAAAAAATGCATCATGAAGAAGTGGGCCTCGGAGTGCCCGATGAGACCCCCTCCTCTCCGCCAACCTCCAGCTCCAGACAGGCATGGAGCCGGGACAACCCAGGGTTCGAGCCGGAGGAGGGGATGATGGAGGCGGACTGGCCCCCGGAGAGTCAGGGCCGGAGGTCTGTGTCCACGACGTCCAGCAGCAGCAGCGGCGGCGTCCCGGGGAACTTCTCCGGTATCAGTGCGCGGATCAACAGAGGACTTTACCCGACTCCTCCAGCACAAGAGCACCGCAGCTGTGGGAAGAGGATACTGGAGAAAATGAGAGTGTTGTGGGATACTCGTCTTTTGGGTGAGAGCAACAGTAACAGAGAGATGTACTTGAAAACCGTCCTGCGAGAAATGATCACCTACATCCTCTTCCTGCTCACCCTCTGCATAATAACCTATGGAATGGTGAGCACCAACATGTACTACTACACCAAAGTCATGTCTCAACTCTTTTTGGATACGCCACTGTCAAGTGGAGAGCCAACCAACTTCAAGAGCCTTTCAACCATGGAGGACTTCTGGAAATTCACAGAAGGCCCGTTTCTTAACGGCATGTACTGGGAGCTCTGGTACAACAACAAGAGTCTCCCAGAAAACCAGAGTCTGATCTATTACGAGAACCTCCTGCTGGGCGTCCCGCGTCTCCGACAGCTCAGAGTACGCAATGAGTCTTGTTCTGTCCATGAGGATCTGCGAGACGAGGTTTACGACTGCTACAACGTCTACTCTCCTGCCAATGAGGACAAGGCACCATTCGGCCCCAAGAATGGCACTGCGTGGAGGTTCAAGGATGAGAGTAGCCTGGGTGAGAGCAGTTACTGGGGACAAGTGTCCACTTATGGTGGTGGAGGTTATTACCAGGATCTGTCCCGCACACGGGAGAAATCAGCCAATCAGCTGCAGGAGCTCAAAAACAACCTCTGGCTGGACCGCGGCACTAGAGCGGTGTTCTTGGACTTCTCCATCTACAACGGCAATGTTAACCTCTTCTGTATTGTGAGACTGCTAGTAGAGTTTCCGGCCACAGGGGGCGCTGTGCCTTCTTGGCAGTTCCAGACGGTGCGTCTGCTCCGCTATGTCTCCAGCTGGGACTACTTTGTTGGCATGTGTGAAGTGTCCTTCTGCCTCTTCGTGCTGTATTACCTGGTGGAGGAAGCTCTAGAGATCCGCCTGCATCGGCTGCGCTACTTCAAGAGCCTGTGGAACTGCTTAGATGTTCTCATAGTTGCATTGAGTGTTCCCGCCATCATTATGAACATCTGCAGAACATCAGCGGTCAGTCACAGACTTCACTTTCTGCTGGAGAACCACAGCACGTATCCCAACTTTGAGCCGCTGGCTCGGCTTCAGGTGCACTTCAACAACCTGGCAGCTATCATAGTCTTCCTCTCATGGGTGAAGCTTTTTAAGTTCATCAACTTCAACAAGACCATGAATCAACTGTCCACCACCATGTCCCGCTGTGCCAAAGACCTGATGGGCTTCGCGATCATGTTTTTCATCGTGTTTCTGGCTTATGCTCAGCTGGCCTATTTAGTGTTTGGAACTCAAGTCAACGACTTCAGCACCTTTCAGGCCTGCATTTTCACGCAGTTCCGGATCATACTGGGTGATTTCGACTTCTCAGAAATCGAGGAGGCCGACAGCGTGTTGGGACCCATTTACTTCACCACCTTTGTGTTCTTCATCTTCATGATTCTGCTGAACATGTTCCTGGCCATCATCAATGACACTTACTCTGAGGTGAAAGCTGACATGGCGCAGCAGAGGTCGGAGATGGAGATCACAGACCTCATTAAGAAGAGCTATAATAGAGCCATGGTGAAGCTGAAGCTGAAGAAGAGCTCTATCAATGATATCCCGGACAGCTTACAGCAGGCAGCAGGAAAACTCAGCTTCGATGAGCTCCGCCAAGACCTTAGAGGAAAGGGCCATTCGGACGCTGAAATTGAAGCTATTTTTGCCAAGTATGACCTTGACGGAGATCAGGAGCTGACCGAACATGAGCACCAGCAGATGAGAGACGACctggagaaagagagaGAGGACTTGGATCTGGAGCACAGTTCGCTGCCGAGGCCAGCCAGTGGACGTAGCTTCTCCCGTAGCCAAGACGACTCAGAGGAGGATGATGACGAGGACAGTGGACACAGCTCTCGACGCCGCGGCAGCAGCTCCGGGGGCGTGTCTTACGAGGAGTTCCAAGTGCTTGTGCGCCGGGTGGACCGAATGGAGCACTCAATTGGCAGCATCGTCTCCAAGATCGATGCCGTTATCGTGAAGTTGGAAGCCATGGAGAGAGCCAAGATGAAGAGGAGAGATGTGCTTGGACGGATCCTGGATGGAGTCATggagGACGAGCGGATGGGTCGGGATCCAGAGCTGCAGCGAGAGCAGATGGACAGGTTGGTTAGGGACGAGCTGGAGCGCTGGGAGTCTGACGACACCATGTCCCAGGTGAGCCACCATCATCATCAGGCCACTCCCATCATCTCATCAGCTCAGCTCCGCCCACGCAGCTCCCGCCCACCCTCCTCGCTGTCCAACGAGGGCCCGGATGCTGCAGCCAGTGGCCCCGCCCACTTGTGAGGGGTGTTTATTTGTGAAAACACTGCTCCAGTAACACAGCTTGCACAAATCAACTTCAGAAGTATCAAAGCCACAGCCGCTAAGGTGAAATAGTCCTgcaaaaaagctatttatttgCGTTTCTTTATATTAAAGTTAATCAGGGCTTTATAAAGATAAAATGATGTAGTTATCAAACACCAGTTTCAGTATTAATTTTCCAAAA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0010882 regulation of cardiac muscle contraction by calcium ion signaling biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0007507 heart development biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0198738 cell-cell signaling by wnt biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0003173 ventriculo bulbo valve development biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0001822 kidney development biological_process
GO:0032965 regulation of collagen biosynthetic process biological_process
GO:0050982 detection of mechanical stimulus biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0051262 protein tetramerization biological_process
GO:0097704 cellular response to oscillatory fluid shear stress biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051284 positive regulation of sequestering of calcium ion biological_process
GO:0051290 protein heterotetramerization biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0072019 proximal convoluted tubule development biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0001947 heart looping biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0042383 sarcolemma cellular_component
GO:0034703 cation channel complex cellular_component
GO:0042995 cell projection cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0030017 sarcomere cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0015271 outward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function
GO:0051371 muscle alpha-actinin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-040827-4 Predicted to enable several functions, including calcium ion binding activity; cation channel activity; and muscle alpha-actinin binding activity. Involved in heart development and positive regulation of sequestering of calcium ion. Acts upstream of or within with a positive effect on cilium assembly. Acts upstream of or within several processes, including circulatory system development; kidney development; and regionalization. Located in basolateral plasma membrane; cilium; and endoplasmic reticulum. Is expressed in several structures, including germ ring; heart; nervous system; pleuroperitoneal region; and tail bud. Used to study autosomal dominant polycystic kidney disease and polycystic kidney disease. Human ortholog(s) of this gene implicated in autosomal dominant polycystic kidney disease; intracranial aneurysm; polycystic kidney disease; polycystic kidney disease 2; and retinal degeneration. Orthologous to human PKD2 (polycystin 2, transient receptor potential cation channel).

Ensembl:

ensembl_id ENSDART00000020412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003157 lncRNA upstream 7145 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00003155 lncRNA upstream 146050 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00003156 lncRNA upstream 146050 50389366 ~ 50392789 (+) True XLOC_000632
TCONS_00003154 lncRNA upstream 615966 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003152 lncRNA upstream 763899 49699382 ~ 49774940 (+) False XLOC_000626
TCONS_00003158 lncRNA downstream 176126 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00001086 lncRNA downstream 364276 50921306 ~ 50924469 (+) True XLOC_000639
TCONS_00003159 lncRNA downstream 386562 50943592 ~ 50953558 (+) True XLOC_000640
TCONS_00001091 lncRNA downstream 420524 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00003160 lncRNA downstream 458828 51015858 ~ 51018551 (+) True XLOC_000643
TCONS_00001080 mRNA upstream 219185 50293938 ~ 50319654 (+) True XLOC_000631
TCONS_00001075 mRNA upstream 350833 50085440 ~ 50188006 (+) False XLOC_000630
TCONS_00001078 mRNA upstream 351082 50085640 ~ 50187757 (+) False XLOC_000630
TCONS_00001077 mRNA upstream 351082 50085640 ~ 50187757 (+) False XLOC_000630
TCONS_00001076 mRNA upstream 406828 50085471 ~ 50132011 (+) False XLOC_000630
TCONS_00001082 mRNA downstream 56838 50613868 ~ 50637221 (+) True XLOC_000635
TCONS_00001083 mRNA downstream 82386 50639416 ~ 50691538 (+) True XLOC_000636
TCONS_00001085 mRNA downstream 364236 50921266 ~ 50929957 (+) False XLOC_000639
TCONS_00001087 mRNA downstream 411878 50968908 ~ 50983855 (+) False XLOC_000641
TCONS_00001088 mRNA downstream 411878 50968908 ~ 50990889 (+) False XLOC_000641
TCONS_00001079 other upstream 406830 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001068 other upstream 823017 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 948016 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 1066514 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 2624630 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001084 other downstream 297334 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 509752 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 908438 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 1126489 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001126 other downstream 1573134 52130164 ~ 52135502 (+) False XLOC_000662

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000301_00522718_00534208.mRNA True 3538 mRNA 0.49 14 CI01000301 522153 ~ 534466 (+)
bowfin (Amia calva) AMCG00015919 True 2742 mRNA 0.60 16 CM030132.1 29665582 ~ 29679948 (+)