RNA id: TCONS_00001082


Basic Information

Item Value
RNA id TCONS_00001082
length 3639
RNA type mRNA
GC content 0.43
exon number 24
gene id XLOC_000635
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 50613868 ~ 50637221 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACATTACTTTCATTTCGCGGGAAGTCATGATGTCCTGAGTCAGCAGTTTCGCTCTCAATTTCTCTTTATATTTTGACCAGCGTTCATTCAGCAGTCAATGGTTCAGAGAGACGCTGCTGAAGTCTGAACGTTTCATCCTAACGGTGAACATGTTGTGTTATTGGGGAGCGCAGGTCCGGGAAGGATTCGGTTTGTTAAAACCTGAGTTGGTCAGACATGGAAACTGTGGGATTAAATCCATCTGTCCGAAATCAGCTGTTCAGGACATGTCAGCTGGAAAGAGCTTCGTTGGATTCATCCGGGAAGGGAAGGTGTCGGTACTGAGACTGCGCGGTAAAGACAGTGACCAAGATGGAAAACTAAaacATTTGCAGCTAAAGAAAAACACAATCAGATTGATTGTCTGTGGTGAATATGGAGCGGTTCTTCTTGATGATGGAGGAAAAGTTCTTATTATGGACAAATCTACTGAGTGCAGTCCTCTTAAAGGTCTGGAGAACAGGCAGGTGATTCAGATCGCATGTGGAGACCAGCATTCAATGGCGCTAACCAACGATGGTCAGTTGTTTGTTTGGGGCGAGAACGCTCTTGGTCAGCTGGGTTTGAGGAAAGAGCAGGCCGGCACTCAGTCTCCTCGACACCTCCAGAGTCTGTGTGGGATCCCAGTGGCTCAGATCAGCGCTGGAGGAAACCACAGCTTTGTGTTGTCTCTGTCAGGAGTCGTGTTTGGGTGGGGGGGCAACTCTGCTGGACAGCTGGGTCTCGGAGACACTACAGACAGATTCGTCCCAACAGTTGTAAATAGTCTTAAACGAAAGAAGATTGTGTCCATCTCATGTGGAGGAGAACACACTGCAGCTCTAGCAAAGGGAGGAACAGTGTTCACATTTGGATCAGGAGGTTTCGGTCAGCTTGGGCACAACTCATTTAAAGATGAACATCATCCACGACTGGTTGCTGAACTGTGGGGATCTAAAGTGTCACAGGTCACATGTGGGAGAAATCACACACTTGTATCGACTGCATCACCAAAGCTGATCTACTCATTTGGATGTGGGATGCAAGGGCAGCTGGGAAATGGAGAACAGGTCAAGCAGTCTGTGCCGTTACCAGTAGACCAGCCAACTGAATATAATGACGAATATACAATTCAAAAACTTGTCGCGGGGGAGAATCATTCGTTTGCCTTGTATTTCAAAGAACTTGGAAATGAGGCTAATCCAGATCCAACCAGAGGGATTATGACATTTGATAACGGAATGATTGAACAATGCGAGTGTGGAAAAGATCCACGGAAAGCGATAAAGGACTTGAAAAAAGTGTTCTCCTCTGCTGCATCTCTAAATGGAAGTTTTCTCAAAACAAGGCATGATGGTCATTATCAGACGTCTGAAGAGTATTGTGGTTTGGATTTTGGTCTGGTTGAATCTTCCATTGCAACTTTATCAAGGAATGAAAGGCTTATCTCAACGGTTTTGAAAGTGCTCCAAGAGTCACTGTTGCCAACTCTAAATCCAAATCCAACTGGTGAGGAATCACTGAGACTCTATATTCTCCTGCCTGAGCTGATCAGCCATCTCAAGAGTGAACAAAAAGCAGAACTTACTGAAGCTCTGGCCTCCAAAATACTTAATCTAAGTCCTGCTGCTCTGAGAGTGTTAGAGATCTACTGGTCCAAACTCCCTGATGACTGGCTTAAAAACTTGGTTAAGTTATTCAAAAAGGCATCAGCTAAATTCTTTGGGAGGATCATTGTCGAGAACGTGAACAATGTGGCTAAAACACACATGCTAAAATTTGTGGAGATTCTTCAAAGGGTCTATCAGGTCTGCTGCAGCGCCAACAGAAATATCAAGAAGAGGTATTTCATCATTCATGAGGTCAACAATCTCCTAGATGTGCTACAAACTATGAATGCAGATGTTAATAACAACTGGCCTTGGTTTAACCTTACTGGACAAATCCATGCCCTGGAGGCACAACGAAATGCGTATGAAGAAACTTTTAGAAAGCTGACATCATTTCCATGCATCTTTAATCTGGAGGCCAAATGTAGCTATATGAGGAACAGAGTATGGAAGGGTCGTTTTGAGCTGACTGTGAGACGCACAGCACTGCTAGAGGATTGTTTATGTCTACTAAACCCAGGCACCCAACAGCATCTCAGAGATAAATGGCTGTCGATTCTTTTCACTGAGAACGTGAGCAAAAGAACAGACGTCCACAAGAGGGACTTCTTTCTCAACGTGTTTAAGGAGCTTTGTGATCCAGCTTCTCAGCTCTTCATGTATAACGACAACGAAACTATGATCTGGTTCCCCGCGAAGCTCACCGTGGAGAAGAAGAAGTACTTCCTGTTTGGGATTCTGTGTGGCTTGGCCTTCAACAACAGCTCTGTAGTCAATCTGCCTTTCCCTTTAGCCCTGTTCAAGAAACTTCTCAACATCAAACCATCTCTGGAAGATTTTATAGAGTTTAATCCAGTCCATGGCAGGAGTTTACAGTACATCCTAGAGTACAGTAATGATGTTCTGGAGGAATCGTCCTTGCCCTTAACGATAATATGGAGTGGATCAGAGCTGGACCTGGACCCTGCTGAGCCAGAACAGCACATCACGACTTCTAACAGAACTAAGTTTGTGGATGAATATGTGGATCACATCTTCAATCAATCAGTGAAGGAGGCGTTTGAAGAATTTAGAAGAGGCTTCTTTAGAGGATGTGAGAAACGCTTGGTGGAGATGTTTGAACCAGAAGAACTGAGGGGGGTGCTGGTGGGCAATGAGGAATATGACTGGAATATACTCAAGCAGAACACTACATATGAAGGCGTATTTAATGCGGATCATCCAGTCATAATCTCTTTCTGGGAGGTGTTTGATGATCTGACACCAAATGAGAAGAAGTCCTTCTTGTtgttTTTGACGGGGTTTGAGAGAGTGCCTATTCTGGGCATGAGCGCGGTGAAGATGAGAGTGACACATTTGGCTAACTCAACTGAGGATCATCTGCCAGAGACTCTCACCTGCCATTCTCTTCTGCAGCTTCCTAAATATGAGAAAAGGGAAACCCTCAGAGCCAAAGTTATTGAGGCCATCAGCCACAAGAGGGGGTTCTGGGAAGAATGAGGCGGATGATGCTCGTCTGAGGCACGTGTAGTCAATGATCTGATGACTTgattctgaaaatgtcttaatagtaaaaattactttaattaatattcagttgaagttagaattattatccctcctgaattattaggccccctgtactgtatatatattttcttcaaCGGAGAGCAGATCTTTTTAACAAAtatcttaacataatagttttaataactcatctctaataactgatttattttatctttgccatgatgacagtaaataatattttactagatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggcaagttagggtaattaggcaagtcataatgatggtttgttctgtagactatcaagaaaaaaggcgggtaataatattgaccttaaaatggtgtttaaaaattagaaattgcttttattcttgccaaaataaaacaaataagattttttccagaagaaaaaatattat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000111114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003157 lncRNA upstream 82174 50528134 ~ 50531694 (+) True XLOC_000633
TCONS_00003155 lncRNA upstream 221079 50389319 ~ 50392789 (+) False XLOC_000632
TCONS_00003156 lncRNA upstream 221079 50389366 ~ 50392789 (+) True XLOC_000632
TCONS_00003154 lncRNA upstream 690995 49920790 ~ 49922873 (+) True XLOC_000628
TCONS_00003153 lncRNA upstream 870641 49737400 ~ 49743227 (+) True XLOC_000626
TCONS_00003158 lncRNA downstream 95935 50733156 ~ 50808448 (+) True XLOC_000637
TCONS_00001086 lncRNA downstream 284085 50921306 ~ 50924469 (+) True XLOC_000639
TCONS_00003159 lncRNA downstream 306371 50943592 ~ 50953558 (+) True XLOC_000640
TCONS_00001091 lncRNA downstream 340333 50977554 ~ 50983939 (+) False XLOC_000641
TCONS_00003160 lncRNA downstream 378637 51015858 ~ 51018551 (+) True XLOC_000643
TCONS_00001081 mRNA upstream 56838 50538839 ~ 50557030 (+) True XLOC_000634
TCONS_00001080 mRNA upstream 294214 50293938 ~ 50319654 (+) True XLOC_000631
TCONS_00001075 mRNA upstream 425862 50085440 ~ 50188006 (+) False XLOC_000630
TCONS_00001083 mRNA downstream 2195 50639416 ~ 50691538 (+) True XLOC_000636
TCONS_00001085 mRNA downstream 284045 50921266 ~ 50929957 (+) False XLOC_000639
TCONS_00001087 mRNA downstream 331687 50968908 ~ 50983855 (+) False XLOC_000641
TCONS_00001088 mRNA downstream 331687 50968908 ~ 50990889 (+) False XLOC_000641
TCONS_00001089 mRNA downstream 339754 50976975 ~ 50990886 (+) False XLOC_000641
TCONS_00001079 other upstream 481859 50131158 ~ 50132009 (+) True XLOC_000630
TCONS_00001068 other upstream 898046 49699903 ~ 49715822 (+) False XLOC_000626
TCONS_00001057 other upstream 1023045 49590701 ~ 49590823 (+) True XLOC_000623
TCONS_00001054 other upstream 1141543 49464741 ~ 49472325 (+) True XLOC_000620
TCONS_00001047 other upstream 2699659 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001084 other downstream 217143 50854364 ~ 50854478 (+) True XLOC_000638
TCONS_00001097 other downstream 429561 51066782 ~ 51073107 (+) False XLOC_000645
TCONS_00001111 other downstream 828247 51465468 ~ 51465582 (+) True XLOC_000651
TCONS_00001119 other downstream 1046298 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001126 other downstream 1492943 52130164 ~ 52135502 (+) False XLOC_000662

Expression Profile

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