RNA id: TU2487


Basic Information

Item Value
RNA id TU2487
length 233
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2223
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3579993 ~ 3580225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCATTTGTTGTAGCATAACAGGAAGCCGGGAGAATGCTCTCACAATTGATTGAACTGTCAAAAAACACGTTGTTTGATTGATCACATTTCAACCAATCATGTCATGCCAATTTTAGATGCGATCGGGTTGGCTGACAGATCCTGGTAGAGAAAATACAAGAATTCAAGGTGAGGTGATACTGTTACACTTCAAGTTTGAAACTTAAATTTCCCTAAAAATACAGCTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470 lncRNA upstream 59109 3520682 ~ 3520884 (+) True G2206
TU2469 lncRNA upstream 59935 3519706 ~ 3520058 (+) True G2205
TU2420 lncRNA upstream 183762 3396006 ~ 3396231 (+) True G2167
TU2414 lncRNA upstream 191769 3387952 ~ 3388224 (+) True G2161
TU2404 lncRNA upstream 207163 3372415 ~ 3372830 (+) True G2151
TU2461 lncRNA downstream 84624 3664849 ~ 3674763 (+) False G2204
TU2462 lncRNA downstream 93985 3674210 ~ 3688189 (+) True G2204
TU2550 lncRNA downstream 118879 3699104 ~ 3699367 (+) True G2283
TU2590 lncRNA downstream 161483 3741708 ~ 3741934 (+) True G2319
TU2591 lncRNA downstream 164348 3744573 ~ 3744823 (+) True G2320
CI01000000_03232984_03233709.mRNA mRNA upstream 346004 3232984 ~ 3233989 (+) True CI01000000_03232984_03233709
CI01000000_03220166_03232503.mRNA mRNA upstream 347490 3220166 ~ 3232503 (+) True CI01000000_03220166_03232503
CI01000000_03184726_03189468.mRNA mRNA upstream 390525 3184680 ~ 3189468 (+) True CI01000000_03184726_03189468
CI01000000_03178021_03180730.mRNA mRNA upstream 399181 3178021 ~ 3180812 (+) True CI01000000_03178021_03180730
CI01000000_03163645_03170599.mRNA mRNA upstream 408982 3163157 ~ 3171011 (+) True CI01000000_03163645_03170599
CI01000000_03630643_03637287.mRNA mRNA downstream 50366 3630591 ~ 3638076 (+) True CI01000000_03630643_03637287
CI01000000_03724666_03729920.mRNA mRNA downstream 143875 3724100 ~ 3730043 (+) True CI01000000_03724666_03729920
CI01000000_03864153_03869858.mRNA mRNA downstream 283928 3864153 ~ 3870226 (+) False CI01000000_03864153_03869858
CI01000000_03919871_03926839.mRNA mRNA downstream 338009 3918234 ~ 3926911 (+) True CI01000000_03919871_03926839
CI01000000_03930421_03932454.mRNA mRNA downstream 350196 3930421 ~ 3933213 (+) True CI01000000_03930421_03932454
TU678 other upstream 1671185 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2147139 1425121 ~ 1432854 (+) True G435
TU431 other upstream 2903056 671842 ~ 676937 (+) True G350
TU325 other upstream 3072921 503209 ~ 507072 (+) True G252
TU3086 other downstream 873553 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 1145761 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6624606 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6846998 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 7398264 10978489 ~ 10980872 (+) True G7018

Expression Profile