Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU2462 |
| length | 1225 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 6 |
| gene id | G2204 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 3664849 ~ 3688189 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2487 | lncRNA | upstream | 93985 | 3579993 ~ 3580225 (+) | True | G2223 |
| TU2470 | lncRNA | upstream | 153326 | 3520682 ~ 3520884 (+) | True | G2206 |
| TU2469 | lncRNA | upstream | 154152 | 3519706 ~ 3520058 (+) | True | G2205 |
| TU2420 | lncRNA | upstream | 277979 | 3396006 ~ 3396231 (+) | True | G2167 |
| TU2414 | lncRNA | upstream | 285986 | 3387952 ~ 3388224 (+) | True | G2161 |
| TU2550 | lncRNA | downstream | 10915 | 3699104 ~ 3699367 (+) | True | G2283 |
| TU2590 | lncRNA | downstream | 53519 | 3741708 ~ 3741934 (+) | True | G2319 |
| TU2591 | lncRNA | downstream | 56384 | 3744573 ~ 3744823 (+) | True | G2320 |
| TU2608 | lncRNA | downstream | 115097 | 3803286 ~ 3803749 (+) | True | G2337 |
| TU2613 | lncRNA | downstream | 124753 | 3812942 ~ 3813197 (+) | True | G2342 |
| CI01000000_03630643_03637287.mRNA | mRNA | upstream | 36134 | 3630591 ~ 3638076 (+) | True | CI01000000_03630643_03637287 |
| CI01000000_03232984_03233709.mRNA | mRNA | upstream | 440221 | 3232984 ~ 3233989 (+) | True | CI01000000_03232984_03233709 |
| CI01000000_03220166_03232503.mRNA | mRNA | upstream | 441707 | 3220166 ~ 3232503 (+) | True | CI01000000_03220166_03232503 |
| CI01000000_03184726_03189468.mRNA | mRNA | upstream | 484742 | 3184680 ~ 3189468 (+) | True | CI01000000_03184726_03189468 |
| CI01000000_03178021_03180730.mRNA | mRNA | upstream | 493398 | 3178021 ~ 3180812 (+) | True | CI01000000_03178021_03180730 |
| CI01000000_03724666_03729920.mRNA | mRNA | downstream | 35911 | 3724100 ~ 3730043 (+) | True | CI01000000_03724666_03729920 |
| CI01000000_03864153_03869858.mRNA | mRNA | downstream | 175964 | 3864153 ~ 3870226 (+) | False | CI01000000_03864153_03869858 |
| CI01000000_03919871_03926839.mRNA | mRNA | downstream | 230045 | 3918234 ~ 3926911 (+) | True | CI01000000_03919871_03926839 |
| CI01000000_03930421_03932454.mRNA | mRNA | downstream | 242232 | 3930421 ~ 3933213 (+) | True | CI01000000_03930421_03932454 |
| CI01000000_03962507_03966711.mRNA | mRNA | downstream | 274122 | 3962311 ~ 3966796 (+) | True | CI01000000_03962507_03966711 |
| TU678 | other | upstream | 1765402 | 1815453 ~ 1908808 (+) | False | G579 |
| TU531 | other | upstream | 2241356 | 1425121 ~ 1432854 (+) | True | G435 |
| TU431 | other | upstream | 2997273 | 671842 ~ 676937 (+) | True | G350 |
| TU325 | other | upstream | 3167138 | 503209 ~ 507072 (+) | True | G252 |
| TU3086 | other | downstream | 765589 | 4453778 ~ 4454232 (+) | True | G2774 |
| TU3177 | other | downstream | 1037797 | 4725986 ~ 4726482 (+) | False | G2850 |
| TU7529 | other | downstream | 6516642 | 10204831 ~ 10321679 (+) | True | G6811 |
| TU7538 | other | downstream | 6739034 | 10427223 ~ 10433018 (+) | True | G6820 |
| TU7753 | other | downstream | 7290300 | 10978489 ~ 10980872 (+) | True | G7018 |
