RNA id: TU2590


Basic Information

Item Value
RNA id TU2590
length 227
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2319
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3741708 ~ 3741934 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAATGTTAGGATAGTTTTATTATAAAGTATTTGAGACTATAGATTATATCTGACTATGTGAGACTATAGTTTGAATTAATCCCTTTTCTTTGCATGACACATTGACATTACAGTAGAGAATGGCTCTTTTAGCATGAACCTGAAGGTGTCATTGAACGGAAAAAAGAGGCTCTCTGGAGCATGTAGAAGTCACATTCTTTTGATTTTCCCAGCAAAAACGTCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2550 lncRNA upstream 42341 3699104 ~ 3699367 (+) True G2283
TU2462 lncRNA upstream 53519 3674210 ~ 3688189 (+) True G2204
TU2461 lncRNA upstream 66945 3664849 ~ 3674763 (+) False G2204
TU2487 lncRNA upstream 161483 3579993 ~ 3580225 (+) True G2223
TU2470 lncRNA upstream 220824 3520682 ~ 3520884 (+) True G2206
TU2591 lncRNA downstream 2639 3744573 ~ 3744823 (+) True G2320
TU2608 lncRNA downstream 61352 3803286 ~ 3803749 (+) True G2337
TU2613 lncRNA downstream 71008 3812942 ~ 3813197 (+) True G2342
TU2622 lncRNA downstream 80193 3822127 ~ 3822366 (+) True G2351
TU2625 lncRNA downstream 85764 3827698 ~ 3827975 (+) True G2354
CI01000000_03724666_03729920.mRNA mRNA upstream 11665 3724100 ~ 3730043 (+) True CI01000000_03724666_03729920
CI01000000_03630643_03637287.mRNA mRNA upstream 103632 3630591 ~ 3638076 (+) True CI01000000_03630643_03637287
CI01000000_03232984_03233709.mRNA mRNA upstream 507719 3232984 ~ 3233989 (+) True CI01000000_03232984_03233709
CI01000000_03220166_03232503.mRNA mRNA upstream 509205 3220166 ~ 3232503 (+) True CI01000000_03220166_03232503
CI01000000_03184726_03189468.mRNA mRNA upstream 552240 3184680 ~ 3189468 (+) True CI01000000_03184726_03189468
CI01000000_03864153_03869858.mRNA mRNA downstream 122219 3864153 ~ 3870226 (+) False CI01000000_03864153_03869858
CI01000000_03919871_03926839.mRNA mRNA downstream 176300 3918234 ~ 3926911 (+) True CI01000000_03919871_03926839
CI01000000_03930421_03932454.mRNA mRNA downstream 188487 3930421 ~ 3933213 (+) True CI01000000_03930421_03932454
CI01000000_03962507_03966711.mRNA mRNA downstream 220377 3962311 ~ 3966796 (+) True CI01000000_03962507_03966711
CI01000000_04019072_04022985.mRNA mRNA downstream 277138 4019072 ~ 4023055 (+) True CI01000000_04019072_04022985
TU678 other upstream 1832900 1815453 ~ 1908808 (+) False G579
TU531 other upstream 2308854 1425121 ~ 1432854 (+) True G435
TU431 other upstream 3064771 671842 ~ 676937 (+) True G350
TU325 other upstream 3234636 503209 ~ 507072 (+) True G252
TU3086 other downstream 711844 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 984052 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 6462897 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 6685289 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 7236555 10978489 ~ 10980872 (+) True G7018

Expression Profile