RNA id: TU32005



Basic Information


Item Value
RNA id TU32005
length 4516
RNA type TUCP
GC content 0.48
exon number 3
gene id G28302
representative True

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6470028 ~ 6502087 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTTTTTTTTTTTTTTTTGTAAATCAAATTCTTTTAATTTGTGATATTTGCAGGTATTGTTCTTTGTAAATATCAGTTCCCAATACTCAAAATACAGGTTAAAACCTTTGTACCGTTGTACTTTTAAAACACTGTAACATGTATCTAAACCTATACACAACATTTAATAACAATAACAATCAAAAACAGAAAAAAATAAGACATTAATAATTATATTGCAGAGAATATTAAGGGCAGTATGTTCTTTGCCAAGCATGTGGCATGTTTTAAGATACAATCATTACGACAATGCATAAGTAAACCTCGAGCAGCTTTACAAGGTCATTGTGGTTGTAATCATGAGGTGCAGCGTGTACATCCCCCCGTCTGGCAGTTCTTAGTCCTTGATATGCCTCTTATCAACACAATACAGCAAAAACACTTCATATGTTTCACTGTTAACAAAGGAAATACAAAACACATTCTCAAACTCAAATGCATGTTGCAATATTGTTGTTATTGCTAAAGAGAAAACGTGAACTTTCATAATATATTTCATCATGTCACATCATGTCTTTGAGTGTGTAAAATGTTGGTAAGCGCTGCTCCTAAACTCACAGAAAAAAATCATAAGAAATACATGATACATATAAAATTTTTTTTGAAAAATTAAGTTAAGTTTGCTTCCATAGTTAAAGACCTTGCTGAAAACTGGTGCTGATAGACACTTTTGAAATTTTAGGACACTTGAGATTTAGGATAACTACTGACCTTTATACATAGTTCACCCAGAAATGCCCATTCTGCCATCATTTAGTCAACCTCATGTTGTTCAAACCGGTTTGACTTTCTTTCTTGTGCGGAACATATAAGATATTTCGAAAAATGTTATAGTGTTTTATTAGTCCATACAATGAAAGTCTAAGGGGTAGGATGTTGTTTTGGGCCCCATTTATGGGCAAAATAACAGTTGAAACGTTCTTTAAAATACAATCTTTTTGTGTTCCATATTAGTAAGAAAGTGATACAGGTGAGTGTGTCAAATGATGACAGAATTTTCATTTATGTGTGCACTTGTTCCTACTCATCAGTCTGTATATTAAATATGGTATTATATAAATAACACAATATACACATGTAAATGTGTAACAGAACATAATTTAAACTAAACATACCTTCTAATAGGCAAACAGCAGCAAACCAAACCTGTTGTTTGCAACGTTCCCGTTATATTTTGCAACAAGTGTTTTTGCTTCCTGTCTTTGAGGCCCATTTATAGACCATATATGTTGATGACATATTAGTAAGCCCGTAGACAATTCTTTCCAAACAACTGAAACATCCATCATTCGTACAAGTGAACACATTCCGCCCCTTGCACATTAATTTATTAAATATTTTTGGCTAGTTTTATTATATTTTTATCTACCAATAAGAGTGAAGTACTCTTTATAATGCTTAATTAAATCCATTCTGAAGAGTTCCGTTAGTCACTACTGATACTTTCCTTGACCTCAAGAGGCAGTGTGTCAAAAAGATGATCCTCCACGAAGAAGAGGTTTTTCCGAAGAAGGTGACATTGGCCAAGTTGGAATGGAAGGCAATCTAAGCAGTTCCCTTTGAGCTCAAGCTGGGACAACTGAGTTAACTGCCCAATGGAGTCTGGGATGGAGGTGATGCCGTTATGACCCACAAGTAAAACCTTCAGTTTGGAACATTTGAACAGTTGATTAGGCAGAACTTCTACCTTGTTCCCTGTGATAGCAAAATGTTGAAGGTTGTGAAGGTGTCCAATCTCCACTGGTATACTTGAGATGGAGTTGTGGCTGAGGTCAATGTGCCTCAGTTTGGGCAGATGAAACAAAGCTGGAGGAAGGGTCTCCAGTTTATTGTGACAGATAATGAGGGACTCCAGACTCTTCACTAGGACTATCGATGGTGGAATGGCAGTGATCTTGTTGTACCACAGCTTGAGACACGCCAATCTTCTCAGGTGCTGAAAGCTGATGATTTCCTCAATGGTCCGGATATTGTTATTCTTCAAATCCAGTTCTTGCAAGCTAGCCAAGCTAAAGATGGCATGGGGGATCCTCTCCAAATCACAGTTCTGGAGCTCCAAATCAACCAGGCTGGTCATCTTCTTGAGACTGTTCAGTACCAGTAATTTAGTCCCATCATTGTGTATCACCAGTTTGACGAGATGTGGTGACAGTTCTGTTAGATTTGTGGGTATTTTGTTGAGATTGCTTTTGAGATACAACATCCTTAAGTGTCTCAGATCTCTCAGTGACTCCAAACCGATCATCTTGTTGTGTTCAGAGTTCAAGTTCCCAATCAGGTTTAGTTCCTTGAGGCTCCTCAACAGATAAATCCACGCTGGGATTTCTGCAACATCAGTAAACTTAATGTGAAGGCGATGCAGATGGTCACGGAGAAAAGTGAAAGCGGTTTGTTCGACTTTAGCAGGGCAGTGATATAGATGTAGTTCCCGTAGGTTGGTCATCTGAGAAACTTTGGCTGAAATCCTGACCTCAGGAATAAGCTCTAACTTGAGGATTTCCAGATCAGTGAGGTCAAATACCGCATTAGGGAGTCCTGAGAGCATAAAGAGGTGTAGTTCTTGTTCATCTTGAGCATTGGATGTTACATGCTGACGTAGTTTTTCAAACGTCCACTCGTGGTTAAGGCTAATTTCTCGTAGTTTGTTCTCACTAACCTCAGAAAGAAATACGCCAAATCGTTTGGAGTACAGCTGATCGTATTGGTCGACCATGTGTAGGAGAAATGCAAAGTCATTCTTGACATCAGGAATATCACTAAAGCTACTTTCCTCTCTGACTTTTTCAAAAGAGTACTCCTTAAGTGGTCTCCTGAAGAGCCAGTAGAGTGTATACAAACACACCAGTCCATAGAGACATATCATAGCCATGAAGGTGAAGAGAAGTTTCCTTAACATGAATGCCATGTTGTGCGTGCAAACGAACTGATCATACCCAGTCAAACTTTCGATTTCAGGTTTGCATATATGGCAGAAACTGATCTTTGCGGCAAACGTTGACGTATAGCTCAAAATCAAAATGATCTTCAGTGCTTTTATTGCTGTCTGAGCCACATAGAGTTTGTAGATGAAGTCACTGTCTTCGATGTGAGCTCGAAATTTTCGCACTTTCTCAAAAAGAGCCTTGGCTTGTTCTCCATCTTTTTTGTCTAACGTGGTCAGGCTGGGAGCTTCCGCAATGAGCTTTTCGGTAGGAAACTGCACTGTTGGAGTTTCCATCAAAGGAGTAGACTGACTGCTGTCCTCCGAGGATACATGTTTCTGGAAAACCGCACCGCCTGTGAATCTTTGCTTGTTTTCCTCAGAATCTTCACAAGCGGTTTCGGACAAAGCTTTCGTTGTCCATGGCGATTCAAAGCACCGCCCCAAAATGGAAACAAAGTGTTCAATCTTTGAGCTGGTCTTTGGGTACTTGAACCAAAAATTGCTGCTTACCATCAGCATTATGGTGTGTATGAGGGCAAGGTAAGGAAAGTATTTGTTATACCACGGTAGGGCATCATGGTAGCACATTTGGTTGACAAAAATATACTGCTGATAGTCCAGGTTTGTTTTACGTCCTCTGGGCTCAGGTTGAGACCACATACCTTCTCCTTTTAAGGGGGTAGGTTGAGTGTTAAGAATTTCATGTGCAATGCTGTCAGGAAGGTCTTTAGTTGTTGTGGGTCCAGTCCCCAGAAGGGATGTTGAACATTCTGGTCGATTTTGTGTTGCCTCAGTGTTTTTCTCAAGAATGGGAAGACATGCCACTTGGTCTTTGGATAACTGCATAGTCCCGGAAAAGATGGCTAACATCAACATTACCACCCCGATATAATCCATGAACACATCCCACCATGGTTTCAGAATACGATAGGTTGGCTGAATGTCATTAAGGGAGGCAACTTCAGTGAGACTAAACATCCCTGTATGTCTCTGCTGACGTTTTTCACTGGGATGGAAGAGCACGCGCTGTTATCTTGATTCTCATATTGCTGTAGACGCTAGATTTGACAAAAGTTGCCGTTGAGCAGGAAATGGACTACAAAATTCAAATACAAAAATGCCAACAAACAATCTTCTTTCAGCATAGAAATGTAATGTCCGTCAACCACTGTACACTCTATCCATAGAAGTAGGAACTCGGCAAGAGGTTTAAAACATGCGATTCTTTGTCCGACTTGCTACGACTTGTAGTTCAGCAGTCAAAATGACGGAGTTGATCCGCTCGTCAGCTGCGTATTTCATTGGACAATGACAGCGCAGCGTTTATGAACCCACCGGATAAGTTAAATTATCACCAGAAAGTCTTACAGCGCTGAAGACGCCCTATACAAAAAGCAGTGTCTAGATAAAGGTGTTTTTTCAATTGTAGGTGGAGTCTGTGAAATATTACAATTCTGACAGCCATAACCATTTAATAATTAAGACTAACCCCGTGCGCTGTTTCTTCTTCTTTTTTTCTTCGTCCATTCTTTTATGAGGAAACTAGGACCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU32029 lncRNA upstream 12747 6456898 ~ 6457281 (+) True G28326
TU32028 lncRNA upstream 13179 6456624 ~ 6456849 (+) True G28325
TU32012 lncRNA upstream 28526 6425355 ~ 6441502 (+) True G28309
TU32011 lncRNA upstream 55772 6413748 ~ 6414256 (+) True G28308
TU31995 lncRNA upstream 73808 6370266 ~ 6396220 (+) True G28293
TU32167 lncRNA downstream 73446 6575533 ~ 6576385 (+) True G28440
TU32148 lncRNA downstream 85795 6587882 ~ 6600374 (+) True G28421
TU32198 lncRNA downstream 136284 6638371 ~ 6638680 (+) True G28471
TU32201 lncRNA downstream 140998 6643085 ~ 6643341 (+) True G28474
TU32203 lncRNA downstream 142922 6645009 ~ 6645279 (+) True G28476
CI01000004_06466871_06468477.mRNA mRNA upstream 1404 6466770 ~ 6468624 (+) True CI01000004_06466871_06468477
CI01000004_06463149_06463918.mRNA mRNA upstream 6022 6463149 ~ 6464006 (+) True CI01000004_06463149_06463918
CI01000004_06424864_06438552.mRNA mRNA upstream 31356 6424584 ~ 6438672 (+) True CI01000004_06424864_06438552
CI01000004_06416971_06417931.mRNA mRNA upstream 51884 6416582 ~ 6418144 (+) True CI01000004_06416971_06417931
CI01000004_06398828_06403391.mRNA mRNA upstream 66383 6398632 ~ 6403645 (+) True CI01000004_06398828_06403391
CI01000004_06503758_06508636.mRNA mRNA downstream 1358 6503445 ~ 6508943 (+) True CI01000004_06503758_06508636
CI01000004_06571261_06572539.mRNA mRNA downstream 68684 6570771 ~ 6572667 (+) False CI01000004_06571261_06572539
CI01000004_06624281_06625474.mRNA mRNA downstream 120950 6623037 ~ 6626433 (+) True CI01000004_06624281_06625474
CI01000004_06637295_06650428.mRNA mRNA downstream 134993 6637080 ~ 6650825 (+) False CI01000004_06637295_06650428
CI01000004_06651958_06654716.mRNA mRNA downstream 149782 6651869 ~ 6654928 (+) True CI01000004_06651958_06654716
TU31830 other upstream 737027 5732589 ~ 5733001 (+) True G28165
TU31414 other upstream 1096225 5372825 ~ 5373803 (+) False G27805
TU31416 other upstream 1096225 5372825 ~ 5373803 (+) False G27805
TU31417 other upstream 1096225 5372825 ~ 5373803 (+) False G27805
TU31418 other upstream 1096225 5372825 ~ 5373803 (+) True G27805
TU32079 other downstream 69133 6572819 ~ 6574421 (+) True G28354
TU32454 other downstream 1152685 7654772 ~ 7654879 (+) True G28706
TU32590 other downstream 1931618 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 2097148 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 2474351 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033

Expression Profile