Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU38779 |
| length | 793 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G34215 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15923704 ~ 15924496 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU38778 | lncRNA | upstream | 2818 | 15920683 ~ 15920886 (+) | True | G34214 |
| TU38777 | lncRNA | upstream | 36170 | 15887278 ~ 15887534 (+) | True | G34213 |
| TU38769 | lncRNA | upstream | 80302 | 15843132 ~ 15843402 (+) | True | G34205 |
| TU38759 | lncRNA | upstream | 143080 | 15779675 ~ 15780624 (+) | False | G34196 |
| TU38760 | lncRNA | upstream | 143609 | 15779675 ~ 15780095 (+) | True | G34196 |
| TU38780 | lncRNA | downstream | 4005 | 15928501 ~ 15928750 (+) | True | G34216 |
| TU38793 | lncRNA | downstream | 90410 | 16014906 ~ 16015106 (+) | True | G34228 |
| TU38794 | lncRNA | downstream | 94767 | 16019263 ~ 16019489 (+) | True | G34229 |
| TU38355 | lncRNA | downstream | 234216 | 16158712 ~ 16160998 (+) | True | G33830 |
| TU38831 | lncRNA | downstream | 256012 | 16180508 ~ 16180849 (+) | True | G34266 |
| CI01000004_15906907_15909647.mRNA | mRNA | upstream | 14035 | 15906907 ~ 15909669 (+) | True | CI01000004_15906907_15909647 |
| CI01000004_15892502_15900203.mRNA | mRNA | upstream | 22852 | 15890373 ~ 15900852 (+) | True | CI01000004_15892502_15900203 |
| CI01000004_15867404_15875293.mRNA | mRNA | upstream | 48400 | 15866985 ~ 15875304 (+) | True | CI01000004_15867404_15875293 |
| CI01000004_15859240_15861471.mRNA | mRNA | upstream | 60255 | 15859240 ~ 15863449 (+) | True | CI01000004_15859240_15861471 |
| CI01000004_15825817_15827475.mRNA | mRNA | upstream | 96101 | 15825817 ~ 15827603 (+) | True | CI01000004_15825817_15827475 |
| CI01000004_15930478_15944692.mRNA | mRNA | downstream | 5982 | 15930478 ~ 15944744 (+) | True | CI01000004_15930478_15944692 |
| CI01000004_15947153_15953245.mRNA | mRNA | downstream | 22657 | 15947153 ~ 15953870 (+) | True | CI01000004_15947153_15953245 |
| CI01000004_16008731_16013012.mRNA | mRNA | downstream | 84119 | 16008615 ~ 16013049 (+) | True | CI01000004_16008731_16013012 |
| CI01000004_16017111_16024481.mRNA | mRNA | downstream | 92489 | 16016985 ~ 16024782 (+) | True | CI01000004_16017111_16024481 |
| CI01000004_16037124_16044487.mRNA | mRNA | downstream | 112628 | 16037124 ~ 16044563 (+) | True | CI01000004_16037124_16044487 |
| TU38554 | other | upstream | 831735 | 15091244 ~ 15091969 (+) | True | CI01000004_15091390_15096502 |
| TU37521 | other | upstream | 1886804 | 14023547 ~ 14031127 (+) | True | G33092 |
| TU36655 | other | upstream | 3267993 | 12642754 ~ 12655711 (+) | True | G32314 |
| TU36123 | other | upstream | 3728557 | 12192130 ~ 12195147 (+) | False | G31865 |
| TU35813 | other | upstream | 4256126 | 11664773 ~ 11665473 (+) | True | G31611 |
| TU38784 | other | downstream | 14861 | 15939357 ~ 15939950 (+) | True | G34220 |
| TU38340 | other | downstream | 138919 | 16063415 ~ 16066464 (+) | True | G33815 |
| TU39001 | other | downstream | 1052832 | 16977328 ~ 17025469 (+) | False | G34400 |
