RNA id: TU41438


Basic Information

Item Value
RNA id TU41438
length 1027
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G36494
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 1442787 ~ 1502949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGGTGGATGTTAGAGACCTTGCGCTCCTCCACCTTCCGTTTGAGGATGCCCCACAGATGCTCAATAGGGTTTAGGTCTGGAGATATTCTTTAGCAAGGCAGTGGTTGTCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTGCCCTGTGGCCCAGTCTCCGAAGGGAGGGGATCATGCTCTGTATGTCACAGTACATCTTGGCATTTATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCAGCAGCACTCATGCAGAACCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGTTGCCACCACACACGCTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTTCAGTAATCCATGTCCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCGGGCTTTCTTGTGCATCATCTTTAGAAGAGGCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCGTATGGTCTGAGCACTGACAGGCTGACCCCCCAACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATATGTCTATTTTCCAAACACAACCTCTTTATATGACGCTGAGTATGTGCACTCAACTTCTTTGGTCGACCATGGCAAGGCCTGTTCTGAGTGGAACCTGTCCTGTTAAACCACTGTATGGTCTTGGCCACCATGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACGCCATCTTTATGTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGACTGAGAGCAACACCAAATTTAACACACCTGCTCCCCATTCACACCTGAGACCTTGTAACACTAATGAGTCACATGACACCGGGGAGAGAAAATGGCTAATTGGGCCCAATTTGGACATTTTTACTTAGGGGTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41357 lncRNA downstream 8910 1431829 ~ 1433877 (-) True G36416
TU41429 lncRNA downstream 11812 1430750 ~ 1430975 (-) True G36486
TU41428 lncRNA downstream 12380 1430153 ~ 1430407 (-) True G36485
TU41403 lncRNA downstream 67073 1371703 ~ 1375714 (-) True G36460
TU41379 lncRNA downstream 94138 1330295 ~ 1348649 (-) True G36436
TU41535 lncRNA upstream 43121 1546070 ~ 1546923 (-) True G36567
TU41500 lncRNA upstream 110182 1613131 ~ 1616304 (-) True G36536
TU41583 lncRNA upstream 114190 1617139 ~ 1617635 (-) True G36614
TU41588 lncRNA upstream 136750 1639699 ~ 1639918 (-) True G36619
TU41589 lncRNA upstream 137261 1640210 ~ 1640515 (-) True G36620
CI01000005_01250101_01298320.mRNA mRNA downstream 144467 1248838 ~ 1298320 (-) True CI01000005_01250101_01298320
CI01000005_00700274_00704932.mRNA mRNA downstream 737855 699474 ~ 704932 (-) True CI01000005_00700274_00704932
CI01000005_00596581_00598577.mRNA mRNA downstream 844210 596167 ~ 598577 (-) True CI01000005_00596581_00598577
CI01000005_00461483_00481276.mRNA mRNA downstream 961003 460760 ~ 481784 (-) False CI01000005_00461483_00481276
CI01000005_00358864_00426242.mRNA mRNA downstream 1015790 358848 ~ 426997 (-) False CI01000005_00358864_00426242
CI01000005_01648294_01654249.mRNA mRNA upstream 145042 1647991 ~ 1654249 (-) True CI01000005_01648294_01654249
CI01000005_01674196_01674495.mRNA mRNA upstream 170490 1673439 ~ 1674495 (-) True CI01000005_01674196_01674495
CI01000005_01677318_01687512.mRNA mRNA upstream 174212 1677161 ~ 1687599 (-) True CI01000005_01677318_01687512
CI01000005_01723641_01729676.mRNA mRNA upstream 220389 1723338 ~ 1730336 (-) True CI01000005_01723641_01729676
CI01000005_01761513_01769840.mRNA mRNA upstream 258238 1761187 ~ 1769851 (-) True CI01000005_01761513_01769840
TU40958 other downstream 399115 1021295 ~ 1043672 (-) True G36049
TU41598 other upstream 160318 1663267 ~ 1664279 (-) False G36628
TU41601 other upstream 160318 1663267 ~ 1664279 (-) True G36628
TU41481 other upstream 380305 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other upstream 380305 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU43637 other upstream 2701896 4204845 ~ 4206208 (-) True G38510

Expression Profile