RNA id: TU45544


Basic Information

Item Value
RNA id TU45544
length 304
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G40179
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6264584 ~ 6264887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAGTCCAAAGACTTACACATTTAGAAACATATTAATAAAACATCATATGTTTACGTCATATTTCTTTAGAAAGAATGAGCATTTCTATTAATTTTCCACAAAATTATGCTATCTGAGGATGTTTGAGCGATCTCTCGTCTCACTATACTGTTATCCTTCAGCCAGAGCAAAAGAGGGTTAACCATTTAACCAGTTATGAGTTAACTGGAGTATATGTCATTATGAGATATGTAGACGCATTAGTCCAGTGTGGTGACAAATCAGGTGTTGGCAAAAACAAGTAAATAGGTTGACATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45541 lncRNA downstream 3532 6260757 ~ 6261052 (-) True G40176
TU45530 lncRNA downstream 31208 6232712 ~ 6233376 (-) True G40165
TU45521 lncRNA downstream 42918 6216505 ~ 6221666 (-) True G40158
TU44853 lncRNA downstream 119678 6144125 ~ 6144906 (-) True G39600
TU44836 lncRNA downstream 142751 6121628 ~ 6121833 (-) True G39587
TU45603 lncRNA upstream 24523 6289410 ~ 6289838 (-) True G40229
TU45614 lncRNA upstream 30393 6295280 ~ 6295580 (-) True G40240
TU45570 lncRNA upstream 128106 6392993 ~ 6402884 (-) True G40196
TU45553 lncRNA upstream 133412 6398299 ~ 6476877 (-) False G40188
TU45554 lncRNA upstream 133412 6398299 ~ 6476877 (-) False G40188
CI01000005_06199038_06247505.mRNA mRNA downstream 17079 6199038 ~ 6247505 (-) True CI01000005_06199038_06247505
CI01000005_06150035_06158315.mRNA mRNA downstream 106269 6148217 ~ 6158315 (-) True CI01000005_06150035_06158315
CI01000005_06116268_06121045.mRNA mRNA downstream 143539 6115625 ~ 6121045 (-) True CI01000005_06116268_06121045
CI01000005_06084718_06097051.mRNA mRNA downstream 166995 6084265 ~ 6097589 (-) True CI01000005_06084718_06097051
CI01000005_06037247_06040370.mRNA mRNA downstream 223952 6036706 ~ 6040632 (-) True CI01000005_06037247_06040370
CI01000005_06302958_06303282.mRNA mRNA upstream 37707 6302594 ~ 6303282 (-) True CI01000005_06302958_06303282
CI01000005_06327379_06328749.mRNA mRNA upstream 62396 6327283 ~ 6328767 (-) True CI01000005_06327379_06328749
CI01000005_06351074_06352066.mRNA mRNA upstream 86181 6351068 ~ 6352066 (-) True CI01000005_06351074_06352066
CI01000005_06354477_06367249.mRNA mRNA upstream 89488 6354375 ~ 6367376 (-) True CI01000005_06354477_06367249
CI01000005_06409550_06410268.mRNA mRNA upstream 144401 6409288 ~ 6410670 (-) True CI01000005_06409550_06410268
TU44763 other downstream 430045 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 430192 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 1863474 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2058376 4204845 ~ 4206208 (-) True G38510
TU41482 other downstream 4375308 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU45564 other upstream 215802 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 930908 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1261334 7526221 ~ 7532148 (-) True G40540

Expression Profile