RNA id: TU45554


Basic Information

Item Value
RNA id TU45554
length 406
lncRNA type read_through
GC content 0.41
exon number 2
gene id G40188
representative False

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6398299 ~ 6476877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAACGGTCGTGTCTGCTGTATATATACTCTGTGAATGAACACTTGCAGTCGGATGTGAGGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCTAGGGTTGATTCGGCTGATCTGGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGTGTCCCTCCCGAAGCTCCGCGCTCGGTTGAAGAGGACGTGTTCCCCCGGCGGACGAGCATCGTTGGTATAGAAGTAGCTGCACTCCCCTGCTAGAACCTCCAAACAAGCTCAAGGCCCATTTGTAGGAGAAACGTAGGGAAGTCGAGCTCCAAGACTTCAAGCACATCCAAATGAGGCACTGCATGTGGCAGTCTGCCTTCAAGCACATCCAAATGAGGCACTGCATGTGGCAGTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45614 lncRNA downstream 102719 6295280 ~ 6295580 (-) True G40240
TU45603 lncRNA downstream 108461 6289410 ~ 6289838 (-) True G40229
TU45544 lncRNA downstream 133412 6264584 ~ 6264887 (-) True G40179
TU45541 lncRNA downstream 137247 6260757 ~ 6261052 (-) True G40176
TU45530 lncRNA downstream 164923 6232712 ~ 6233376 (-) True G40165
TU45602 lncRNA upstream 31734 6508611 ~ 6554943 (-) True G40228
TU45605 lncRNA upstream 61956 6538833 ~ 6539939 (-) True G40231
TU45689 lncRNA upstream 171275 6648152 ~ 6648368 (-) True G40310
TU45692 lncRNA upstream 174811 6651688 ~ 6651918 (-) True G40313
TU45695 lncRNA upstream 203159 6680036 ~ 6681249 (-) True G40316
CI01000005_06354477_06367249.mRNA mRNA downstream 30923 6354375 ~ 6367376 (-) True CI01000005_06354477_06367249
CI01000005_06351074_06352066.mRNA mRNA downstream 46233 6351068 ~ 6352066 (-) True CI01000005_06351074_06352066
CI01000005_06327379_06328749.mRNA mRNA downstream 69532 6327283 ~ 6328767 (-) True CI01000005_06327379_06328749
CI01000005_06302958_06303282.mRNA mRNA downstream 95017 6302594 ~ 6303282 (-) True CI01000005_06302958_06303282
CI01000005_06199038_06247505.mRNA mRNA downstream 150794 6199038 ~ 6247505 (-) True CI01000005_06199038_06247505
CI01000005_06481721_06483251.mRNA mRNA upstream 4478 6481355 ~ 6483251 (-) False CI01000005_06481721_06483251
CI01000005_06507647_06517258.mRNA mRNA upstream 30280 6507157 ~ 6517566 (-) True CI01000005_06507647_06517258
CI01000005_06518032_06559301.mRNA mRNA upstream 41155 6518032 ~ 6559436 (-) False CI01000005_06518032_06559301
CI01000005_06567196_06595338.mRNA mRNA upstream 90032 6566909 ~ 6597439 (-) True CI01000005_06567196_06595338
CI01000005_06609686_06619218.mRNA mRNA upstream 132765 6609642 ~ 6619218 (-) True CI01000005_06609686_06619218
TU44763 other downstream 563760 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 563907 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 1997189 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2192091 4204845 ~ 4206208 (-) True G38510
TU41482 other downstream 4509023 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU45564 other upstream 3812 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 718918 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1049344 7526221 ~ 7532148 (-) True G40540

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012343 True 322 misc_RNA 0.58 1 NC_007124.7 825904 ~ 826225 (-)
striped catfish (Pangasianodon hypophthalmus) TU63458 True 451 lncRNA 0.56 2 NC_047597.1 27530679 ~ 27532958 (-)
bowfin (Amia calva) TU63458 True 1247 lncRNA 0.50 3 CM030126.1 8357450 ~ 8360962 (-)