RNA id: CI01000005_06409550_06410268.mRNA


Basic Information

Item Value
RNA id CI01000005_06409550_06410268.mRNA
length 1105
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000005_06409550_06410268
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 6409288 ~ 6410670 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAATTAGACATCACCCAGGTAACTCTCGCCTACTCTTTTATGAATACTAAGGATTCGGACATACTTATTCGCTCGCCTACTGCTTTCCCCCTACTATATAGTAGAGAAGCAGGTGGTTTCGGATGCAGCCTATGTGTGTGCGCACTAAATAAATAATCAGAAATCACAGCAAGTCTTTGTCCCGTGGCATTTATAACATAACATGGTGTCAGAAATAGGGACTGGCGAACACTGGAGAGTTTGTGTAAAATAGCCAGCAAGACCAGACCCACGGTGAGCGGCCAAAGAGACGAACGCATGCGGGCCGAGTGCAGGAAAGCCAAGTACAGCAGCGCAGCGAAAAAGCAGGTCGAAAAGACATAGTTGACACAAAGTAAGAGAACTCAGAGTGTTTTCCCGTCATGGAGAAGTTAAATCCCCCATCGCCTATGCAGCTCGTCGGTAATCTGGCTGAAAACTGGAAACGTTTCAAGCAGAGATTCAACATCTATCTTGCTGCTAGTGGTGCAGGTGGAGATGATGAGAGGTTAAAAGCATCGATCTCTCTGCATGTCATAGGGAAAGACTGCTATGTGAACCAGTCATACGAGATTCAGACCGAGTGTGGTGCAATTCTAAGAAGGAACAGAGGGGACTTAAGACCACAAGTGACTGTTCAAGAAGCTGAGTCGCAGTCAAATGACAAAGATGTGTCTGACATTTCCACAAGTGAACAAACTGACAACAGTCCTGTGGACCACACTGACTCTGATCTGACAAAGGACCTTACTGCTTCACCTGGGAAGTATTGCAGACCAAAACGCACTGTTAGACCTACTGAAAGGTTAATTGAAATTTGTTGAATGGGGTTTAAAAAAAAAAAAAAGTTCATTGTGAAAATTCTGTGGTGCATTTGTTGTGATGTTGTTATGAAAATGTTATTTTTGGTACAAGTGCCAATTGGGAGAAAAGATTTCAAAGGAAAGTTATTTACTTTTGAAGGGGGGAAGATGTAATGTTATGTCCGATAACAACTTTGGTTCCGGTACTGGTTGCGGACCGGGCAATTCTAGGGAGTGCACCGGGCCAATGAGAAAAACTCTATGTGTGTGCGCACTAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45570 lncRNA downstream 6404 6392993 ~ 6402884 (-) True G40196
TU45614 lncRNA downstream 113708 6295280 ~ 6295580 (-) True G40240
TU45603 lncRNA downstream 119450 6289410 ~ 6289838 (-) True G40229
TU45544 lncRNA downstream 144401 6264584 ~ 6264887 (-) True G40179
TU45541 lncRNA downstream 148236 6260757 ~ 6261052 (-) True G40176
TU45599 lncRNA upstream 36514 6447184 ~ 6450541 (-) True G40225
TU45602 lncRNA upstream 97941 6508611 ~ 6554943 (-) True G40228
TU45605 lncRNA upstream 128163 6538833 ~ 6539939 (-) True G40231
TU45689 lncRNA upstream 237482 6648152 ~ 6648368 (-) True G40310
TU45692 lncRNA upstream 241018 6651688 ~ 6651918 (-) True G40313
CI01000005_06354477_06367249.mRNA mRNA downstream 41912 6354375 ~ 6367376 (-) True CI01000005_06354477_06367249
CI01000005_06351074_06352066.mRNA mRNA downstream 57222 6351068 ~ 6352066 (-) True CI01000005_06351074_06352066
CI01000005_06327379_06328749.mRNA mRNA downstream 80521 6327283 ~ 6328767 (-) True CI01000005_06327379_06328749
CI01000005_06302958_06303282.mRNA mRNA downstream 106006 6302594 ~ 6303282 (-) True CI01000005_06302958_06303282
CI01000005_06199038_06247505.mRNA mRNA downstream 161783 6199038 ~ 6247505 (-) True CI01000005_06199038_06247505
CI01000005_06435458_06437854.mRNA mRNA upstream 24788 6435458 ~ 6438177 (-) True CI01000005_06435458_06437854
CI01000005_06458571_06470774.mRNA mRNA upstream 47815 6458485 ~ 6470927 (-) True CI01000005_06458571_06470774
CI01000005_06481721_06483251.mRNA mRNA upstream 70685 6481355 ~ 6483251 (-) False CI01000005_06481721_06483251
CI01000005_06507647_06517258.mRNA mRNA upstream 96487 6507157 ~ 6517566 (-) True CI01000005_06507647_06517258
CI01000005_06518032_06559301.mRNA mRNA upstream 107362 6518032 ~ 6559436 (-) False CI01000005_06518032_06559301
TU44763 other downstream 574749 5833792 ~ 5834539 (-) True G39515
TU44762 other downstream 574896 5833792 ~ 5834392 (-) False G39515
TU43542 other downstream 2008178 4381238 ~ 4401110 (-) True G38415
TU43637 other downstream 2203080 4204845 ~ 4206208 (-) True G38510
TU41482 other downstream 4520012 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU45564 other upstream 70019 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 785125 7195795 ~ 7196428 (-) True G40487
TU46013 other upstream 1115551 7526221 ~ 7532148 (-) True G40540

Expression Profile