RNA id: TU51335


Basic Information

Item Value
RNA id TU51335
length 378
lncRNA type intronic
GC content 0.37
exon number 1
gene id G45174
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 7597380 ~ 7597757 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACGTGTGAGGAGTCGCCTGTCAATTGCGTCATACCCGCGTTACCCTCGGTTTCCGTATTTTGTAGAAACCATGGAAACACCAAAGACGCTTTAATATACATGTTTTAATAGACAAGGAACAACTGTTTTGATATATTTATAGACAGAAATCTAACTGTTGTTATATAGCTCAACACCTTTAGTCTTATTATTTAAATCTAACTTTCTTGCTCTGGAGGGTTAATAAAGGCCTTCTGAAGCAAAGCGATGCGTTTGTATAAAAAAAATTTGCATATTTAAACAAGTTATGAAGTAAAGTATCGAGCTACCACCAGAACGCCTTCCGTATTGAACGTACGCAGAAAGTGTAAAACTCTTGCAGTTCACAAAGCTTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51315 lncRNA upstream 43046 7554097 ~ 7554334 (+) True G45154
TU51312 lncRNA upstream 47370 7549799 ~ 7550010 (+) True G45151
TU51309 lncRNA upstream 53311 7543813 ~ 7544069 (+) True G45148
TU51307 lncRNA upstream 55522 7541654 ~ 7541858 (+) True G45146
TU51297 lncRNA upstream 73750 7523397 ~ 7523630 (+) True G45136
TU51336 lncRNA downstream 436 7598193 ~ 7598590 (+) True G45175
TU51293 lncRNA downstream 1079 7598836 ~ 7599365 (+) True G45132
TU51345 lncRNA downstream 5928 7603685 ~ 7604821 (+) True G45179
TU51343 lncRNA downstream 9847 7607604 ~ 7648616 (+) False G45178
TU51344 lncRNA downstream 11921 7609678 ~ 7619307 (+) False G45178
CI01000006_07577082_07582303.mRNA mRNA upstream 15067 7576398 ~ 7582313 (+) True CI01000006_07577082_07582303
CI01000006_07492187_07498391.mRNA mRNA upstream 98706 7492187 ~ 7498674 (+) True CI01000006_07492187_07498391
CI01000006_07486574_07490054.mRNA mRNA upstream 106804 7485978 ~ 7490576 (+) True CI01000006_07486574_07490054
CI01000006_07477200_07478617.mRNA mRNA upstream 118594 7476928 ~ 7478786 (+) True CI01000006_07477200_07478617
CI01000006_07458458_07460310.mRNA mRNA upstream 137070 7458113 ~ 7460310 (+) False CI01000006_07458458_07460310
CI01000006_07692311_07693192.mRNA mRNA downstream 94483 7692240 ~ 7694117 (+) True CI01000006_07692311_07693192
CI01000006_07694812_07698078.mRNA mRNA downstream 97055 7694812 ~ 7698434 (+) True CI01000006_07694812_07698078
CI01000006_07699736_07726659.mRNA mRNA downstream 101979 7699736 ~ 7726997 (+) True CI01000006_07699736_07726659
CI01000006_07757777_07795187.mRNA mRNA downstream 159769 7757526 ~ 7795258 (+) True CI01000006_07757777_07795187
CI01000006_07939608_07940846.mRNA mRNA downstream 341561 7939318 ~ 7941415 (+) True CI01000006_07939608_07940846
TU51004 other upstream 209496 7356352 ~ 7387884 (+) True G44872
TU50906 other upstream 426846 7169829 ~ 7170534 (+) True G44782
TU49812 other upstream 1468705 6128606 ~ 6128675 (+) True G43873
TU49806 other upstream 1487792 6108484 ~ 6108637 (+) True G43869
TU49835 other upstream 1825605 5770089 ~ 5771775 (+) True G43896
TU51341 other downstream 24234 7621991 ~ 7683671 (+) False G45178
TU51448 other downstream 286110 7883867 ~ 7920355 (+) False G45265
TU51537 other downstream 421585 8019342 ~ 8021951 (+) True G45336
TU51558 other downstream 561759 8159516 ~ 8159528 (+) False G45351
TU51555 other downstream 600124 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463

Expression Profile