RNA id: TU58708


Basic Information

Item Value
RNA id TU58708
length 555
RNA type TUCP
GC content 0.47
exon number 1
gene id G51529
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3062033 ~ 3062587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAACCAGCTTGCGGCCATTTCGCTCCTGATTTTCGGCGAGCGTGTGATGCACTCGCACACACACGCGCGCATCGCGGGGGTGTTCGCTGAATCGCTGAGTACCGAATTGAAATGCACTCAGTGGATTAGTGCTATTTGAGAGAGGAGTGCCTCTCCGAGGGGCTGAATGTGCCGCAGGAAAACTGACCTGCGCCCATCACGATTAAAGCCGCCCAGTTTGTTATGCAACAGCTCTACAAGTGCAGTCAGACAACTCCTACAGCTGTTTCATGCAGGAGTCACGACTCAAATGTGTAGGCTCTCCATTACCTTTTGTCCGCTACCGGCGCTGATTTTTCACAGACTGCCGCTGCGACCCATTGTAGCCCTCCTCCACCCCCACACACTGGATTGTGAGCCCCCGTTTTGGAGTGTTTCAAATGGAGATGGAGGTGGTGGGGTGACCCCTCGACAGAGTGTGGGAAGCCCGTTTGGGCACCGAAGGGCTGATTAAGCCTTCCATATCCCCTGTTGTGCTCCACTGTGATGTAACACCTTCTCCTAGACGAATGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58706 lncRNA upstream 7021 3054332 ~ 3055012 (+) True G51527
TU58704 lncRNA upstream 10669 3050909 ~ 3051364 (+) True G51525
TU58702 lncRNA upstream 11925 3049792 ~ 3050108 (+) True G51523
TU58699 lncRNA upstream 14934 3046149 ~ 3047099 (+) True G51522
TU58690 lncRNA upstream 60125 3001610 ~ 3001908 (+) True G51514
TU58710 lncRNA downstream 1613 3064200 ~ 3064432 (+) True G51531
TU58716 lncRNA downstream 13555 3076142 ~ 3076380 (+) True G51537
TU58718 lncRNA downstream 19342 3081929 ~ 3082410 (+) True G51539
TU58734 lncRNA downstream 45139 3107726 ~ 3108011 (+) True G51553
TU58732 lncRNA downstream 45876 3108463 ~ 3108912 (+) True G51552
CI01000009_02918681_02973307.mRNA mRNA upstream 88081 2918681 ~ 2973952 (+) True CI01000009_02918681_02973307
CI01000009_02799246_02827589.mRNA mRNA upstream 234393 2799031 ~ 2827640 (+) True CI01000009_02799246_02827589
CI01000009_02713403_02713914.mRNA mRNA upstream 348035 2712958 ~ 2713998 (+) True CI01000009_02713403_02713914
CI01000009_02674026_02678655.mRNA mRNA upstream 383287 2673802 ~ 2678746 (+) True CI01000009_02674026_02678655
CI01000009_02667840_02668883.mRNA mRNA upstream 392869 2667442 ~ 2669164 (+) True CI01000009_02667840_02668883
CI01000009_03123137_03137452.mRNA mRNA downstream 59529 3122116 ~ 3138311 (+) True CI01000009_03123137_03137452
CI01000009_03145417_03159851.mRNA mRNA downstream 82830 3145417 ~ 3159914 (+) True CI01000009_03145417_03159851
CI01000009_03164135_03169470.mRNA mRNA downstream 99731 3162318 ~ 3170140 (+) True CI01000009_03164135_03169470
CI01000009_03202999_03207060.mRNA mRNA downstream 139620 3202207 ~ 3207428 (+) False CI01000009_03202999_03207060
CI01000009_03211734_03220047.mRNA mRNA downstream 149147 3211734 ~ 3221307 (+) False CI01000009_03211734_03220047
TU58428 other upstream 711547 2255099 ~ 2350486 (+) True G51274
TU58306 other upstream 1160607 1894235 ~ 1894364 (+) True G51182
TU58233 other upstream 1380067 1680146 ~ 1681966 (+) True G51122
TU57959 other upstream 1623678 1422847 ~ 1438355 (+) True G50926
TU57948 other upstream 2291800 769841 ~ 770233 (+) True G50920
TU58745 other downstream 140185 3202772 ~ 3207924 (+) False CI01000009_03202999_03207060
TU58746 other downstream 140185 3202772 ~ 3208984 (+) False CI01000009_03202999_03207060
TU58749 other downstream 140185 3202772 ~ 3208306 (+) False CI01000009_03202999_03207060
TU58750 other downstream 140185 3202772 ~ 3207486 (+) False CI01000009_03202999_03207060
TU58751 other downstream 140185 3202772 ~ 3208523 (+) False CI01000009_03202999_03207060

Expression Profile