RNA id: TU86661


Basic Information

Item Value
RNA id TU86661
length 358
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G75961
representative False

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 11154688 ~ 11155492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAGCAATTTAACTAAACACACTAACACAGTCGACGGAGGCGTTGTGTTTTGTTTATGCTTGTATAGCCAGTTTCACACAGCGCGGCACTCATTCTGTGTTGCCATGGTCACTCATTATAAGCTTTTTGGGCTCGTCTCATAAAGCAAACGGGTTTATGGAGTTATTAAAGTGAGCAGACATGAATCGCGATTTTCAGCATAAAGCATTTGGATAGGCTTGTGCTTTCCCTGTGATTCGCCACGCATACACGAGAGACACACGTTACACCGGTGCACGTAAACATCATTAACAACTAGTTGTTAAGTTCGGTTCCGTACACACTGCGTGGAATTTCTGTAAATGCGGTTGTCACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86657 lncRNA downstream 1730 11152621 ~ 11152958 (-) True G75958
TU86655 lncRNA downstream 3499 11150862 ~ 11151189 (-) True G75956
TU86654 lncRNA downstream 4110 11150349 ~ 11150578 (-) True G75955
TU86643 lncRNA downstream 19468 11134988 ~ 11135220 (-) True G75944
TU86632 lncRNA downstream 32787 11121304 ~ 11121901 (-) True G75933
TU86672 lncRNA upstream 7199 11162244 ~ 11162578 (-) True G75969
TU86676 lncRNA upstream 18532 11173577 ~ 11173871 (-) True G75973
TU86679 lncRNA upstream 20255 11175300 ~ 11175507 (-) True G75976
TU86698 lncRNA upstream 42262 11197307 ~ 11197733 (-) True G75995
TU86704 lncRNA upstream 50909 11205954 ~ 11206153 (-) True G76001
CI01000012_11088423_11089301.mRNA mRNA downstream 64496 11088141 ~ 11090192 (-) True CI01000012_11088423_11089301
CI01000012_11068977_11070913.mRNA mRNA downstream 83359 11068861 ~ 11071329 (-) True CI01000012_11068977_11070913
CI01000012_11047566_11050458.mRNA mRNA downstream 102276 11047388 ~ 11052412 (-) True CI01000012_11047566_11050458
CI01000012_11000305_11008211.mRNA mRNA downstream 144851 10999678 ~ 11009837 (-) True CI01000012_11000305_11008211
CI01000012_10993043_10996095.mRNA mRNA downstream 158593 10992471 ~ 10996095 (-) True CI01000012_10993043_10996095
CI01000012_11292683_11315522.mRNA mRNA upstream 137638 11292683 ~ 11316018 (-) True CI01000012_11292683_11315522
CI01000012_11585774_11608639.mRNA mRNA upstream 430583 11585628 ~ 11608975 (-) True CI01000012_11585774_11608639
CI01000012_11799629_11846842.mRNA mRNA upstream 644584 11799629 ~ 11846842 (-) True CI01000012_11799629_11846842
CI01000012_11905259_11905909.mRNA mRNA upstream 750111 11905156 ~ 11906244 (-) True CI01000012_11905259_11905909
CI01000012_11925364_11925971.mRNA mRNA upstream 769954 11924999 ~ 11925971 (-) True CI01000012_11925364_11925971
TU86281 other downstream 533817 10611915 ~ 10620871 (-) False G75608
TU86282 other downstream 533817 10611915 ~ 10620871 (-) True G75608
TU85530 other downstream 1578716 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 1578764 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 1752720 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU87807 other upstream 893999 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 923891 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 923891 12080546 ~ 12083845 (-) True G77017
TU87800 other upstream 1799401 12954446 ~ 12955664 (-) True CI01000012_12954694_12954954
TU88148 other upstream 2464231 13619276 ~ 13633819 (-) True G77287

Expression Profile