RNA id: CI01000013_05905378_05906438.mRNA



Basic Information


Item Value
RNA id CI01000013_05905378_05906438.mRNA
length 1533
RNA type mRNA
GC content 0.36
exon number 5
gene id CI01000013_05905378_05906438
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5905244 ~ 5907255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCTCTTTTACCCCAGTCTACCGCCAGGGGTACCTGTAAACTAAAGGTTCAATAAGGTTTAAAGCATAGGTTTAAAGGTTCAGTTAAAAACATGAACATGTTTACAAATATTAACACATTTTACTGCTTTCTTATTTTTCAAACTTAAAATTGTTTTAGGTATTGTCGAACTTCTACCTTTAAAATTAAAACAAAAACATGGGCTTATTTCTCCCTTATTTACATTTATGCTAAATTTATCTAATAGAATTAAATAATATTCAAGACATGTAATTAAAATCGAACAAAATATTTTTAAAACACAGTTGAAAGCTGTGAATGAAGTGATTCCTAATAAATGAACAGAAATCGCTGGATACGGGAATGGGGTGGGGACAACTGCATAAAAGTGAAAGCGGCAAACTTCCGTGTAAGTTTGCGTCATAAGGAAACGTACGACTCCAACACAACCAAGGACTGAAGTTTCCCGGTAAGTTTTGTTTTGTATTTATCTTCTGTTAAGATAAGATTGTATTTATTTTCTGTTAAGATTGCTTTGACATTCATTCAACAGATTATATGCGGTCCGATAACAGAATTATATTAAAGTTATGCGCATTTTGCTTTGAGATTTATTAGATATGATTACTTGACGTCGTTTAAAGTTTCAGCTATAGCTTCGAAACCGTTCACAAGCTGAAACGGTGCAGTTAAAGTCTTTTTAGACATTAAATGTTAAGTTCACATTATTCATTTTGATTTGATTAAGTGTTTAACGTATAAGATGTGACAAGCACATTTAAAATGTCGTTTACTTGAACAGTGGTTGTTTTACATGATGGAAGGTGATTCACCTTCAATAACATGTAGCGATGAATATCGACTGCTTCGAACATACTGCCTGAAGAGGAGAAAGTCAAGCACCAAAAAAGGTGCCTGTATGTACTACGCACAATCAGCTGAGATATTTGGTGATGTGGCTGAAAAACTGACCCGGATTGTAGACAGCGGACTTCTTAAAGATGATGATGGTGAAATAGAGGCAGATTCTGTTAACGGCGATGTTATAGAGAAGCTTGTTGACTTACTGAAGAAATCAGGGGATGACTTAAATGACAAGATTCAGAAGAACCATGAGCTTGTAGGATACCTGCAGAGTACTTTCTCCTACGACTTGTTTGAAAAACTGACCACGGCCTTCATCAAAAGTGTGGTACCAGAATATCTTCAGAGCAGAAGCAACCATGAGCAGATCGCCCTGACCTTTGAGGTCACCAGCAGGCTCCAAGCCTTGGACCTTCACCCCATGAACAGGGTCATGGGATTCGGAGCTCACTACCTGCAAAAGTACTTCGCTCCCTGGGTTAAACAACACGGTGGATGGGAGAAAGCCTTTGACGATGATGAGGAGGTCCATTGACAAGATTTACTGTGAAATGGATGGTTATTAGTAATTTATGATACAAGATGATTTTTTTTTTCTTTTTTTTTGTGTGATATTTAAATGTTTCATTCATAGTATTAAATATATACTTGCTTGTATTGTCAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94160 lncRNA downstream 4189 5900839 ~ 5901055 (-) True G82765
TU94158 lncRNA downstream 20040 5884981 ~ 5885204 (-) True G82763
TU94122 lncRNA downstream 68176 5819554 ~ 5837068 (-) True G82728
TU94109 lncRNA downstream 113107 5790763 ~ 5792137 (-) True CI01000013_05793138_05803928
TU92886 lncRNA downstream 130065 5774974 ~ 5775179 (-) True G81622
TU94163 lncRNA upstream 1001 5908256 ~ 5908611 (-) True G82768
TU94182 lncRNA upstream 29482 5936737 ~ 5942361 (-) True G82783
TU94210 lncRNA upstream 90215 5997470 ~ 5997989 (-) True G82811
TU94176 lncRNA upstream 133533 6040788 ~ 6042755 (-) True G82777
TU94181 lncRNA upstream 143211 6050466 ~ 6057537 (-) True G82782
CI01000013_05883498_05884071.mRNA mRNA downstream 21173 5882857 ~ 5884071 (-) False CI01000013_05883498_05884071
CI01000013_05793138_05803928.mRNA mRNA downstream 101068 5791537 ~ 5804176 (-) False CI01000013_05793138_05803928
CI01000013_05688638_05691660.mRNA mRNA downstream 213316 5688583 ~ 5691928 (-) True CI01000013_05688638_05691660
CI01000013_05652235_05656208.mRNA mRNA downstream 248787 5652118 ~ 5656457 (-) True CI01000013_05652235_05656208
CI01000013_05638498_05647534.mRNA mRNA downstream 257710 5638478 ~ 5647534 (-) True CI01000013_05638498_05647534
CI01000013_05911902_05917100.mRNA mRNA upstream 4206 5911461 ~ 5917579 (-) True CI01000013_05911902_05917100
CI01000013_05928871_05930892.mRNA mRNA upstream 21468 5928723 ~ 5930892 (-) True CI01000013_05928871_05930892
CI01000013_06061522_06065866.mRNA mRNA upstream 153196 6060451 ~ 6065866 (-) False CI01000013_06061522_06065866
CI01000013_06067565_06070941.mRNA mRNA upstream 159629 6066884 ~ 6071892 (-) False CI01000013_06067565_06070941
CI01000013_06081396_06091061.mRNA mRNA upstream 174007 6081262 ~ 6091061 (-) True CI01000013_06081396_06091061
TU94120 other downstream 20872 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 161206 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 1154683 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 1346341 4556868 ~ 4558903 (-) False G80954
TU91578 other downstream 1839227 4064942 ~ 4066017 (-) True G80443
TU94655 other upstream 1432454 7380297 ~ 7382360 (-) True G83206
TU95233 other upstream 3399781 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 4572606 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 4656204 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 4684949 10592204 ~ 10595337 (-) True G85188

Expression Profile