RNA id: CI01000026_02602796_02611957.mRNA


Basic Information

Item Value
RNA id CI01000026_02602796_02611957.mRNA
length 2376
RNA type mRNA
GC content 0.47
exon number 13
gene id CI01000026_02602796_02611957
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2602796 ~ 2612380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGCTGTGGGACAGTCTAATAATGATGGATCATGACACACAGTGGCTGTACCAGCTCCTTGCTGAAGTGCAGCTAGAGAGATTCTACCTAAGGATGCGAGATGGACTCAATGTGACGCGAATTGAACACCTGAACTACGTTAAAGAAGCAGACCTTGAACAGATTGGCATTAGTAAACCAGGACAGCGACGATTATGGGAAGCCGTCAAACGTTACAAAACCAACATGCGACAACGGCCGTGGATGACGAAGGCCTTCAATGGTCGCACCCCTGAGGGAAGTGAGCCGTATAATGGTGCTGGGCCAGGCCAGGGGCCAGATCCAGGGCGCGCGCTCACCTGTCTTATCCAGGACAGTGAACTGATCTTTGGCGACAGGCTAGGCTCAGGTTCATTTGGGGTAGTTAGGAAAGCAGAATGGCACACACCGACTGGACGAGTGTTGCCTGTAGCAGTGAAAACCTTGAGGAGTGGCTCAAACAGACCGGATGACATGGTGACTGATTTCCTCATGGAAGTTACGACCATGCAGTCTCTGGACCACCCCAACATTATACACCTCTATGGTGTTGTCCTTACTCGTCCTCTTAAAATGGTAGCTGAGCTGGCTCCTTTCGGTTCTTTATACGACACTCTGCGTCTACGACATGGAGAATATCCTCTTTCACGACTCTGGCTCTTCAGCACACAGATTGCTGCAGGTATGGAGTACCTAGAGTCCAGACGCTTCATCCACAGAGACCTTGCTGCCCGGAATGTGTTCTTGGCTTCTAGAGAGCAAGTGAAGATCGGAGACTTCGGACTAATGAGAGGCTTGGATCAGGACAAAGACCACTATATCATGACGGCACACAGACGCATCCCATTCGCATGGTGTGCTCCTGAGAGTTTGCGTGTGGGTTCTTTCTCTCATGCTTCAGATGTCTGGATGTTTGGTGTCACATTGTGGGAAATGTTTACTTACTGTGAGGAGCCCTGGTTGGGACTGTCTGGCAGACAGATTTTGTATCGTGTAGAACGGGAAGGTGAGCGATTGGAGAGACCTTCAGACTGTCCGCAGGAGTTGTACTCTGTAATGCGTAAATGTTGGGCCTGCAATCCTGCTGACCGACCGACCTTCTCTCAGCTCACCACTATTGTAGCAGATGCACAGCCTATGGAGGTTCGTGCAGTGAAAGATCTCATAGATCCCAGAAAACTCTGTCTACAGGCGAATGATCTAGTGACTGTAATAGACCATGGGCTGGAATTGTGTGAGTGGAAGGGGCAAAACCAGAGAACTCTAAGTGTTGGCTGGTTCCCCCCTGTGTTAGCTGCCCCTGCTGTCACAGCAGCAGTTCCTGTGTCTGGTCCGACACGCAGCTGGGGCACCCCAGAACGAATAGATGAACCCAGACGTTGGAGGATTCCATTAGCAAGAGAGAAGGAAGGCTCAAACCTGAAGAAAATGTCAGGCATATCGAGAAGCCTGGAGTCCATCCTTGGTGCTTCACAGGACAAAGGTCGAGGTGCTGGTGGGAATGGAGCTCAGAGACCCGACCCACGCAGACTCATGCAGAGTAATATGATGCAAGACCCCCGCAGGTTTAGTGATGCTGTTGTCACCCCACCTCCACGCCCACCACCCCCCAACATCAAATGCATCAGCCCACCAACCACCAGCTTCAAACCCCAGATGATGATCCATGATCGGAGAACAGTTCAGGAGGCGGTACATGGAGTGACCATTGAGGAGGTTCAGAGAGCTCTGCATCGCAATGACTGGAATCCTGCACGGGCAGAACAGCAGCTTAAGACAGAACAGCTGTATTACATGAATCAGTGCTCTCGTGAGGAATGTCAAAAAATTCTCGCCCGCTACAACTGGGACCTGCAAGTGGCAAGCCGTTACATCTGCCGACTGGCTAAAGACAGAGAAAGAACTTCAATGGATAGACGAGGAGAAAGAGTTTAACGCAATACAATGTTAACAGTAAAGATTGTTCATAATTGAGTATTTAAAGTTTTTTTTGTGTGTGTGTGTGTGATATCACCGAGTTGTCAAGAGGTCACACGAAAACCCTGTTTCCATTAACCTCCAATGTGAAACTATCTTTAGTGTATTATGTGACTCTGTATTATATGTGCTTGACTGATAAATTGGTGATATCAGTTGTTATTTTACATCTGTTTAGAAAGACAGCATAATCGTTCGTATTAAATGCAGAATGTTTTTTAACAGATGCCATTCCAGTTGCCATTGTGACTGCTTATTGTTAATTTACAATTTTTTTGTATTCGAATAGGTTTGTTAAATTTTAATGTGTGATAAATTCAGTGAAACTGTGTAAATGTATATGATGATTTATGAAATGTTAGAAATATTTTTATCTGTTTA

Function

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K08252 E2.7.10.1; receptor protein-tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145012 lncRNA upstream 19045 2514231 ~ 2583751 (+) False G127623
TU145009 lncRNA upstream 19045 2535206 ~ 2583751 (+) False G127623
TU145013 lncRNA upstream 19045 2535206 ~ 2583751 (+) False G127623
TU145014 lncRNA upstream 19045 2535206 ~ 2583751 (+) True G127623
TU145044 lncRNA upstream 27881 2572994 ~ 2574915 (+) True G127652
TU145110 lncRNA downstream 18715 2631095 ~ 2631370 (+) True G127710
TU145038 lncRNA downstream 34729 2647109 ~ 2648639 (+) True G127646
TU145062 lncRNA downstream 48619 2660999 ~ 2661597 (+) True G127670
TU145061 lncRNA downstream 95145 2707525 ~ 2708131 (+) True G127669
TU145128 lncRNA downstream 123599 2735979 ~ 2736398 (+) True G127725
CI01000026_02559910_02563125.mRNA mRNA upstream 39117 2559843 ~ 2563679 (+) True CI01000026_02559910_02563125
CI01000026_02476591_02498283.mRNA mRNA upstream 104295 2476591 ~ 2498501 (+) True CI01000026_02476591_02498283
CI01000026_02400893_02403816.mRNA mRNA upstream 198965 2399889 ~ 2403831 (+) True CI01000026_02400893_02403816
CI01000026_02351177_02371429.mRNA mRNA upstream 230978 2351104 ~ 2371818 (+) True CI01000026_02351177_02371429
CI01000026_02332785_02336722.mRNA mRNA upstream 265850 2332203 ~ 2336946 (+) True CI01000026_02332785_02336722
CI01000026_02650632_02651292.mRNA mRNA downstream 38252 2650632 ~ 2651507 (+) True CI01000026_02650632_02651292
CI01000026_02659356_02660297.mRNA mRNA downstream 46225 2658605 ~ 2660653 (+) False CI01000026_02659356_02660297
CI01000026_02692703_02703519.mRNA mRNA downstream 80323 2692703 ~ 2703741 (+) True CI01000026_02692703_02703519
CI01000026_02722558_02725907.mRNA mRNA downstream 110178 2722558 ~ 2726305 (+) True CI01000026_02722558_02725907
CI01000026_02795613_02801257.mRNA mRNA downstream 183060 2795440 ~ 2801816 (+) True CI01000026_02795613_02801257
TU144890 other upstream 175790 2393683 ~ 2427006 (+) False G127519
TU144889 other upstream 175790 2423747 ~ 2427006 (+) False G127519
TU144910 other upstream 290661 2309322 ~ 2312135 (+) True G127531
TU144867 other upstream 656357 1931183 ~ 1946439 (+) True G127500
TU143767 other upstream 1824999 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU145006 other downstream 46835 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU145397 other downstream 1140171 3752551 ~ 3762986 (+) True G127979
TU145592 other downstream 1675493 4287873 ~ 4318645 (+) True G128133
TU145596 other downstream 1818182 4430562 ~ 4431201 (+) True G128137
TU145659 other downstream 1943396 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066011 False 2719 mRNA 0.48 14 NC_007118.7 26545911 ~ 26564784 (+)