RNA id: TU144867



Basic Information


Item Value
RNA id TU144867
length 1364
RNA type TUCP
GC content 0.48
exon number 11
gene id G127500
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1931183 ~ 1946439 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGCGGCCAGCACAAACATGCTGACCTTCAAATAACCTCTGGCCCCTGCAGAAAGATCATCAGGGTCTGACAGCAACAGCCATTTCCTGAGAATAGCATGTCGGTGTTCATTATACACCAAGCCAACATCCAGCTTGAATTCTCCAATGACAGAGTCTTTCCGTAGTGACTTGGAGTCAAATACGGTTATAAATATAGATTCATCAAAAAGATCTGAAGGTTTCTCATAGAAGTTTAGAAAGAAAGTCTCATCAAAAAATGGATTATTGCCCTTCCTGATGCGTGTTCTCTTCGTCTGTCCTCCAACTGTAACCTTGACAACTGGTTTAATGTTGACACCAGGGAGCTGTCTTCCCTCAATGATGCGCAGCCGTACCTGGAGGTCCTGGGGTTTGTCAGAAAGGGGGGATTTGTTTCCGTGGCGTTTCTTTTTTTTAAGGCCATGGTTAAAGTTTGGTGGAGCCTTTTTGGGTGGTGCTGTAGGGGCCCCGATGTCTTGCCCCTGTGGCCCTGGAGTAGGTTCAGGCTCCTCCACCACCTCCATCATCAGCATGCTCTCAGTGTCCTCCTCACCCAAAGTGTCCAATGAGAAAACTGTAACTGTGTCCAGCTCCACTGGGGTGTGCTGGGCCTCTGGCTGTGGAGGAGGCTGGAAGATGGGTGCCATCCCTGGAGGAGGGATGTAGGAAACCTGCAGGGTTACTGTGGCCCCTGTGCTGTTCCTTTTGGTGTCTACCAGGGACACAGTGAAATTAGCAGCTAGGTTTGGAGAGTTGAGCACATCTCGAAGAGCTACTCGACACTCCCCCAGAAACCTATTTCTGCCCATTTTCTCATGGTCCTTGACAACAACATGAAGCTCTGCTGCAGAATCTAAAGGAACTCCCTTCAAGTCCCACTCAAAGCCCTCGTTCCAGACAGGATTGACATTATTTTTGATGACTTTGGTCTTCTTTTTTGTCCCTCTGAAAGTGATGCTAGCAAGTGGGTCACTATGCCTCTCCCCCTTTTCTACATTTCTCAAGTTGGTTGCCCTCTGTAGCAAACACCTCAACATGCTGCCTTGATGGCCAAACTCTCCAACAAGAAACAGGCCAAACTACCATCAGACTACAGAAGAGGGACAGATCCCGGCAGGCAGGACCCCCGCAAAAGTTGCTCTGAAGATAAATGCGTCTTGTGATCTTTAGGTCCAAAGCTGAAGTTGAGCGTGATATCCAGAATGGAATGTATCAGGAGTTGCATAAGCTCACCACTATCCTGAGAAAATCAATTTTTGTCCTTGATAAGGCGTCTGAATTGATAAACGAGTCTCGCAATCTTCCCTTACGAGCGCTTCTTACATGTGTACACAGAGACTGTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144822 lncRNA upstream 63010 1866583 ~ 1868173 (+) True G127464
TU144817 lncRNA upstream 68450 1862274 ~ 1862733 (+) True G127459
TU144829 lncRNA upstream 83178 1847743 ~ 1848005 (+) True G127469
TU144826 lncRNA upstream 86007 1844850 ~ 1845176 (+) True G127467
TU144808 lncRNA upstream 123873 1806880 ~ 1807310 (+) True G127450
TU144882 lncRNA downstream 36619 1983058 ~ 1983272 (+) True G127515
TU144923 lncRNA downstream 67854 2014293 ~ 2024089 (+) True G127543
TU144928 lncRNA downstream 127522 2073961 ~ 2074239 (+) True G127548
TU144918 lncRNA downstream 178759 2125198 ~ 2129093 (+) True G127538
TU144935 lncRNA downstream 192460 2138899 ~ 2139109 (+) True G127555
CI01000026_01604062_01608083.mRNA mRNA upstream 322016 1604003 ~ 1609167 (+) True CI01000026_01604062_01608083
CI01000026_01587300_01603806.mRNA mRNA upstream 327377 1587300 ~ 1603806 (+) True CI01000026_01587300_01603806
CI01000026_01516754_01566669.mRNA mRNA upstream 362847 1516359 ~ 1568336 (+) True CI01000026_01516754_01566669
CI01000026_01479116_01511199.mRNA mRNA upstream 419865 1479116 ~ 1511318 (+) True CI01000026_01479116_01511199
CI01000026_01449646_01450471.mRNA mRNA upstream 480712 1448858 ~ 1450471 (+) True CI01000026_01449646_01450471
CI01000026_01961557_01976089.mRNA mRNA downstream 14531 1960970 ~ 1976089 (+) True CI01000026_01961557_01976089
CI01000026_02039441_02068942.mRNA mRNA downstream 90506 2036945 ~ 2070666 (+) True CI01000026_02039441_02068942
CI01000026_02080994_02090637.mRNA mRNA downstream 134222 2080661 ~ 2090637 (+) True CI01000026_02080994_02090637
CI01000026_02097643_02120853.mRNA mRNA downstream 151015 2097454 ~ 2121455 (+) True CI01000026_02097643_02120853
CI01000026_02150810_02194735.mRNA mRNA downstream 203601 2150040 ~ 2196065 (+) True CI01000026_02150810_02194735
TU143767 other upstream 1153386 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU143752 other upstream 1176020 754791 ~ 755163 (+) False G126556
TU144910 other downstream 362883 2309322 ~ 2312135 (+) True G127531
TU144890 other downstream 447244 2393683 ~ 2427006 (+) False G127519
TU144889 other downstream 477308 2423747 ~ 2427006 (+) False G127519
TU145006 other downstream 712776 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU145397 other downstream 1806112 3752551 ~ 3762986 (+) True G127979

Expression Profile