RNA id: CI01000026_01604062_01608083.mRNA



Basic Information


Item Value
RNA id CI01000026_01604062_01608083.mRNA
length 1353
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000026_01604062_01608083
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1604003 ~ 1609167 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCATATAAGCCGATGTAAATTTCACAGGGTATGGCCAGTTCTGCTTTAACCAGTGCAGGATGGCTCTGGAGGAATCAGTCTTGAAATCGTTTGAGATGAGTAGTTTTGTTTTTGTGTGCGAGTGTCTGGATGGAATCCACATTTCCAACCACAATGTCTGTGAGTATGCCTGGGAGCAGATATTTGGAGGACATGAAGATGCTTCCAGGATTCTCAATGGAGAACACTCTGAAACATCCGTGATCACTACTGAGACTGTTCTGTGCTAGCCATCCCTCTTCTCCACAACATTCTTGATGTTTTCATGGATGAAACAAACAAAGGTCTCAAACAAATTGCTGCATAGCTGAAGATTTTATTTGTCTGTCAATATAGGCAAACATTGGAAATAAGACTTGAAGTGCAAGTGGACATGAGTTATGTGTTAAAACACTTCATAACTGATTCTTGCATCACAACTCTTGAGAAAATCGATTTATTCAGTTTTTCATTTTCAGAAAAGTTTCTCTTTCATTCTGGCCATCTCTATGTTCATGGCAAGAGAGCTCATGCTTTTACATTTTTGTGGTTGTTTAGCATCAAATTTGTGACGGGAACAACCCCTGGCTTGCCAAAGTAGTACACTAACAGTGGGAGCAACGCGTATCGTTACAAAGTCACGGTGATGCACGCTTTCAATTTGTGGGTAATTGCTACAAGCTGATTTGGGGTTTAGAACTTTCAGCTGGGAAGCCAGGATGAAGTGATGACAGGACATGTTTGGTCCACGTTTGTCATAGAACTACAATCAAGCCAAAACCCACAAAACATCAGACACTTGCAATGGAGGAGATCAACATCTCTTCAGGAGATCATACACCTGTACTAGCTTGAACAGTAGATTTAATTCAGCTGAGGGAGTTTGGGACAGCTGAATCAGATGTGGTTTAGAGAATCAAAATTTAATTCAGAACAGCATCTGTCAAGAAGTAGGGAGATTTTATGTGGGGTATTCCTTTAATACTAGTGGTTTAATCTTTCATCTTTTGTTTTTTGATTCTTTAAACCAAACCATATTAACTTCCTTTCTAATTTTCAGTCTGAATTCACAAAGCCCTCATTGTGCTCTGGGTCTGGCTGACAGAATGTAGAACCAGAGAGTGTGTACATGTCTGTGTGAGATTGTATTCAGACTTTCATTCTGGCTTGTTTATGAACAATGACCTTTCTGGAGAGTGCTTTACACCATGTCCAGACGTTCCAGTGAATGGCCATCTATGTGTCTGTTCAATCTGGTACAGTTTTTTTTAGGAATAATGATTGGAAATTCACAGCATGATTCATTGACACAGCAGGGTCAAGCTGGAGACTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU143988 lncRNA upstream 164854 1438914 ~ 1439149 (+) True G126752
TU143982 lncRNA upstream 213970 1389823 ~ 1390033 (+) True G126746
TU143790 lncRNA upstream 221498 1379965 ~ 1381468 (+) False G126583
TU144747 lncRNA downstream 103212 1712379 ~ 1712666 (+) True G127402
TU144754 lncRNA downstream 106495 1715662 ~ 1716279 (+) False G127405
TU144752 lncRNA downstream 106621 1715788 ~ 1716211 (+) False G127405
TU144755 lncRNA downstream 106621 1715788 ~ 1716279 (+) True G127405
TU144771 lncRNA downstream 126700 1735867 ~ 1736127 (+) True G127417
CI01000026_01587300_01603806.mRNA mRNA upstream 197 1587300 ~ 1603806 (+) True CI01000026_01587300_01603806
CI01000026_01516754_01566669.mRNA mRNA upstream 35667 1516359 ~ 1568336 (+) True CI01000026_01516754_01566669
CI01000026_01479116_01511199.mRNA mRNA upstream 92685 1479116 ~ 1511318 (+) True CI01000026_01479116_01511199
CI01000026_01449646_01450471.mRNA mRNA upstream 153532 1448858 ~ 1450471 (+) True CI01000026_01449646_01450471
CI01000026_01431872_01432826.mRNA mRNA upstream 171086 1430400 ~ 1432917 (+) True CI01000026_01431872_01432826
CI01000026_01961557_01976089.mRNA mRNA downstream 351803 1960970 ~ 1976089 (+) True CI01000026_01961557_01976089
CI01000026_02039441_02068942.mRNA mRNA downstream 427778 2036945 ~ 2070666 (+) True CI01000026_02039441_02068942
CI01000026_02080994_02090637.mRNA mRNA downstream 471494 2080661 ~ 2090637 (+) True CI01000026_02080994_02090637
CI01000026_02097643_02120853.mRNA mRNA downstream 488287 2097454 ~ 2121455 (+) True CI01000026_02097643_02120853
CI01000026_02150810_02194735.mRNA mRNA downstream 540873 2150040 ~ 2196065 (+) True CI01000026_02150810_02194735
TU143767 other upstream 826206 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU143752 other upstream 848840 754791 ~ 755163 (+) False G126556
TU144867 other downstream 322016 1931183 ~ 1946439 (+) True G127500
TU144910 other downstream 700155 2309322 ~ 2312135 (+) True G127531
TU144890 other downstream 784516 2393683 ~ 2427006 (+) False G127519
TU144889 other downstream 814580 2423747 ~ 2427006 (+) False G127519
TU145006 other downstream 1050048 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297

Expression Profile