RNA id: TU144829


Basic Information

Item Value
RNA id TU144829
length 263
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G127469
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1847743 ~ 1848005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAAGTGAAAAGATTATATAATATCCAAGTTAAACTGCTTTTAAACAGTCCACAATTAGCAGGTGAATTGGTAATAGGTGAGGATATCATATTTGGGTGTAAAAGAGCTTCTCAGTCTTTGCAAGAAAAGATGGGTCATGGCTCACCACTTTGTGCCAAATGTCATGAGAGAATTGTCAAACAATTCAAAAATAACATTTCTCAATGCAAGATTGCAAAGAATTTATGTCTTTCACCATCTACCATACATAATATTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144826 lncRNA upstream 2567 1844850 ~ 1845176 (+) True G127467
TU144808 lncRNA upstream 40433 1806880 ~ 1807310 (+) True G127450
TU144802 lncRNA upstream 70542 1776968 ~ 1777201 (+) True G127445
TU144801 lncRNA upstream 72386 1775080 ~ 1775357 (+) True G127444
TU144793 lncRNA upstream 86972 1760465 ~ 1760771 (+) True G127436
TU144817 lncRNA downstream 14269 1862274 ~ 1862733 (+) True G127459
TU144822 lncRNA downstream 18578 1866583 ~ 1868173 (+) True G127464
TU144882 lncRNA downstream 135053 1983058 ~ 1983272 (+) True G127515
TU144923 lncRNA downstream 166288 2014293 ~ 2024089 (+) True G127543
TU144928 lncRNA downstream 225956 2073961 ~ 2074239 (+) True G127548
CI01000026_01604062_01608083.mRNA mRNA upstream 238576 1604003 ~ 1609167 (+) True CI01000026_01604062_01608083
CI01000026_01587300_01603806.mRNA mRNA upstream 243937 1587300 ~ 1603806 (+) True CI01000026_01587300_01603806
CI01000026_01516754_01566669.mRNA mRNA upstream 279407 1516359 ~ 1568336 (+) True CI01000026_01516754_01566669
CI01000026_01479116_01511199.mRNA mRNA upstream 336425 1479116 ~ 1511318 (+) True CI01000026_01479116_01511199
CI01000026_01449646_01450471.mRNA mRNA upstream 397272 1448858 ~ 1450471 (+) True CI01000026_01449646_01450471
CI01000026_01961557_01976089.mRNA mRNA downstream 112965 1960970 ~ 1976089 (+) True CI01000026_01961557_01976089
CI01000026_02039441_02068942.mRNA mRNA downstream 188940 2036945 ~ 2070666 (+) True CI01000026_02039441_02068942
CI01000026_02080994_02090637.mRNA mRNA downstream 232656 2080661 ~ 2090637 (+) True CI01000026_02080994_02090637
CI01000026_02097643_02120853.mRNA mRNA downstream 249449 2097454 ~ 2121455 (+) True CI01000026_02097643_02120853
CI01000026_02150810_02194735.mRNA mRNA downstream 302035 2150040 ~ 2196065 (+) True CI01000026_02150810_02194735
TU143767 other upstream 1069946 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU143752 other upstream 1092580 754791 ~ 755163 (+) False G126556
TU144867 other downstream 83178 1931183 ~ 1946439 (+) True G127500
TU144910 other downstream 461317 2309322 ~ 2312135 (+) True G127531
TU144890 other downstream 545678 2393683 ~ 2427006 (+) False G127519
TU144889 other downstream 575742 2423747 ~ 2427006 (+) False G127519
TU145006 other downstream 811210 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297

Expression Profile