RNA id: TU144801


Basic Information

Item Value
RNA id TU144801
length 278
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G127444
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 1775080 ~ 1775357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTGATAGAGGGAACATAATTTTGGCTGCACAGCAGCTCTAGAAGAAAATGGTGTCATTGTCCAGTAAGTTCAGTATTGATTAATTCCGTTGTAAAAAATGAATAGTTATTATTTTAGTTCATTTATCTATACAGCAGCTCTGGAGAAAACAGTGATGTCATCATCCAGCTCAGTTCAGTTCACATACAATGGTGTCAATGCAGGCAGATCAAAAACATTGTTGAATATCAAGTGTCCCCAACTAAGCAAGCCAGAGGCAACAGTGGCAAGGAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144793 lncRNA upstream 14309 1760465 ~ 1760771 (+) True G127436
TU144771 lncRNA upstream 38953 1735867 ~ 1736127 (+) True G127417
TU144754 lncRNA upstream 58801 1715662 ~ 1716279 (+) False G127405
TU144755 lncRNA upstream 58801 1715788 ~ 1716279 (+) True G127405
TU144752 lncRNA upstream 58869 1715788 ~ 1716211 (+) False G127405
TU144802 lncRNA downstream 1611 1776968 ~ 1777201 (+) True G127445
TU144808 lncRNA downstream 31523 1806880 ~ 1807310 (+) True G127450
TU144826 lncRNA downstream 69493 1844850 ~ 1845176 (+) True G127467
TU144829 lncRNA downstream 72386 1847743 ~ 1848005 (+) True G127469
TU144817 lncRNA downstream 86917 1862274 ~ 1862733 (+) True G127459
CI01000026_01604062_01608083.mRNA mRNA upstream 165913 1604003 ~ 1609167 (+) True CI01000026_01604062_01608083
CI01000026_01587300_01603806.mRNA mRNA upstream 171274 1587300 ~ 1603806 (+) True CI01000026_01587300_01603806
CI01000026_01516754_01566669.mRNA mRNA upstream 206744 1516359 ~ 1568336 (+) True CI01000026_01516754_01566669
CI01000026_01479116_01511199.mRNA mRNA upstream 263762 1479116 ~ 1511318 (+) True CI01000026_01479116_01511199
CI01000026_01449646_01450471.mRNA mRNA upstream 324609 1448858 ~ 1450471 (+) True CI01000026_01449646_01450471
CI01000026_01961557_01976089.mRNA mRNA downstream 185613 1960970 ~ 1976089 (+) True CI01000026_01961557_01976089
CI01000026_02039441_02068942.mRNA mRNA downstream 261588 2036945 ~ 2070666 (+) True CI01000026_02039441_02068942
CI01000026_02080994_02090637.mRNA mRNA downstream 305304 2080661 ~ 2090637 (+) True CI01000026_02080994_02090637
CI01000026_02097643_02120853.mRNA mRNA downstream 322097 2097454 ~ 2121455 (+) True CI01000026_02097643_02120853
CI01000026_02150810_02194735.mRNA mRNA downstream 374683 2150040 ~ 2196065 (+) True CI01000026_02150810_02194735
TU143767 other upstream 997283 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU143752 other upstream 1019917 754791 ~ 755163 (+) False G126556
TU144867 other downstream 155826 1931183 ~ 1946439 (+) True G127500
TU144910 other downstream 533965 2309322 ~ 2312135 (+) True G127531
TU144890 other downstream 618326 2393683 ~ 2427006 (+) False G127519
TU144889 other downstream 648390 2423747 ~ 2427006 (+) False G127519
TU145006 other downstream 883858 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297

Expression Profile